Fix Newick format using internal IDs #154
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: version info | |
| run: rustc --version; cargo --version; | |
| - name: Run all tests | |
| run: cargo test | |
| python-bindings: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: version info | |
| run: rustc --version; cargo --version; | |
| - name: Run all tests | |
| run: cargo test --features=python_test | |
| - name: Install python headers | |
| run: sudo apt-get update && sudo apt-get install python3-dev python3-pip python3-venv | |
| - name: Install maturin | |
| run: | | |
| python3 -m venv venv | |
| . venv/bin/activate | |
| pip3 install maturin | |
| pip3 show maturin | |
| - name: add library to venv | |
| run: | | |
| . venv/bin/activate | |
| maturin develop --features=python | |
| - name: Run the python tests | |
| run: | | |
| . venv/bin/activate | |
| python test_python.py | |
| - name: compile taxonomy with python bindings in release mode | |
| run: | | |
| . venv/bin/activate | |
| maturin build --features=python --release --strip --manylinux=off | |
| fmt: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - uses: actions-rs/cargo@v1 | |
| with: | |
| command: fmt | |
| args: --all -- --check | |
| clippy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - uses: actions-rs/cargo@v1 | |
| with: | |
| command: clippy | |
| bench: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: run benches | |
| run: cargo bench |