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Sync: bring OntoPortal up-to-date with BioPortal releases 5.26.0 and onward #2

Merged
merged 104 commits into from
Jan 16, 2024
Merged

Sync: bring OntoPortal up-to-date with BioPortal releases 5.26.0 and onward #2

merged 104 commits into from
Jan 16, 2024

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syphax-bouazzouni
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syphax-bouazzouni and others added 30 commits April 4, 2022 18:22
@syphax-bouazzouni
add a script to eradicate (delete data+ files) submissions of an onto…
d63831c 
…logy
@syphax-bouazzouni
Auto stash before merge of "development" and "master"
534140f
@syphax-bouazzouni
omit logs link file
49dedee
@syphax-bouazzouni
update the eradicator to support the eradication of not archived subm…
4112b0e 
…issions if wanted
@syphax-bouazzouni
fix the delete submission files to not let behind empty directories
c39323c
@syphax-bouazzouni
not remove the submission directory beaucse it's already done by the …
89979b7 
…submission.delete
@jvendetti
Update Gemfile.lock
7954f24
@jvendetti
Merge master into develop
6ceec82
@jvendetti
Reset branch specifier to develop
84c807c
@syphax-bouazzouni
extract do_ontology_pull function
c70eed8
@syphax-bouazzouni
some simple code refactor in the ontology_pull
d47dc9b
@syphax-bouazzouni
simple code refactor of test_ontology_pull
42dd776
@syphax-bouazzouni
add a script to do a ontology pull on an ontology on demand
ffd6c8a
@syphax-bouazzouni
set the name of the new script in $0
857ef76
@syphax-bouazzouni
extract new_file_exists? method from do_ontology_pull
96cd185
@syphax-bouazzouni
save the submission in the RemoteFileException
ee5ca71
@syphax-bouazzouni
some automatic code refactor/lint
1627331
@syphax-bouazzouni
use the new do_ontology_pull in the old do_remote_ontology_pull
fe30343
@mdorf
fixed an API call mentioned by @syphax-bouazzouni in ncbo/bioportal-p…
0fe50fd 
…roject#254
@mdorf
fixed an API call mentioned by @syphax-bouazzouni in ncbo/bioportal-p…
4d409a9 
…roject#254
@mdorf
Gemfile.lock update
8ad6ad0
@alexskr
bump up version of actions/checkout from v2->v3
d35f679
@alexskr
Gemfile.lock update
9de20c5
@alexskr
Merge branch 'develop'
a1a4bab
@syphax-bouazzouni
remove forgot variables
8535b30
@alexskr
Merge pull request #52 from ontoportal-lirmm/pl/add-eradicator-script
10e2c65 
Add a script to remove a list of submission from an id to an other id
@alexskr
GH Actions unit test workflow refactor
387272d 
- add ruby versioning via docker-compose.yml file
- bump up ruby v2.6 -> v2.7
- add AllegroGraph backend
- add code coverage
@alexskr
Remove extra space
4cba785
@alexskr
Merge branch 'docker_unit_test_workflow_refactor'
7094af8
@alexskr
fix for #61
f7aa1be 
- create contact instance if it doesn't exist
- changed --from-api to --from-apikey
- minor linting
alexskr and others added 28 commits July 31, 2023 21:59
@alexskr
use patched version of agraph v7.3.1
5e6a8f4
@alexskr
unpin faraday gem
1f81bdb
@mdorf
A chnage to reference Analytics Redis from LinkedData block
79104ab
@mdorf
Gemfile.lock update
9a57e53
@alexskr
Gemfile.lock update
656b3ac
@mdorf
Gemfile.lock update
ed14911
@mdorf
Merge staging for release
e1e0bf7
@mdorf
Gemfile.lock update
55ac1ca
@alexskr
Gemfile.lock update
020ca5d
@alexskr
Merge branch 'develop'
3fef501
@alexskr
use assert_operator instead of assert
ac798aa 
minitest style guide adherence.
encountered an intermittent unit test failure so assert_operator will provide
better failure feedback than assert
@mdorf
fixed ncbo_ontology_archive_old_submissions error output
88e8399
@mdorf
Gemfile.lock update
2861ee8
@mdorf
Gemfile.lock update
33cc9b4
@mdorf
Gemfile.lock update
7429289
@alexskr
Gemfile update
bb93561
@alexskr
Gemfile update
a208272
@mdorf
fixes to the analytics script and a new script to generate UA analyti…
e8fa020 
…cs for documentation
@mdorf
Gemfile.lock update
6317dc4
@mdorf
Gemfile.lock update
c2a72db
@mdorf
Gemfile.lock update
ab43cdc
@mdorf
implemented the first pass at bmir-radx/radx-project#37
a659415
@mdorf
Gemfile.lock update
ad283a2
@mdorf
implemented the first pass at bmir-radx/radx-project#37
2331631
@alexskr
set bundler version to be comptatible with ruby 2.7
07107b1 
+ AG v8
@mdorf
Gemfile.lock update
a733888
@alexskr
Gemfile.lock update
7066b67
@alexskr
Merge branch 'develop'
b01a904
@syphax-bouazzouni syphax-bouazzouni merged commit bc68802 into ontoportal:master Jan 16, 2024
@syphax-bouazzouni syphax-bouazzouni mentioned this pull request Jan 16, 2024
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4 participants
@syphax-bouazzouni @alexskr @jvendetti @mdorf