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Update miniscopedaq-miniscopev4.rst
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added explicit mention to the fact that the miniscope's own software does not support commutation

added another application that could potentially achieve atuomatic commutation from the miniscope
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ChucklesOnGitHub authored Jul 12, 2024
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Expand Up @@ -4,8 +4,11 @@ Miniscope DAQ and UCLA Miniscope v4

.. image:: ../../../_static/images/miniscopedaq-miniscopev4.jpg

There are two applications that can be used to automate commutation with the Miniscope DAQ and UCLA Miniscope v4.
They are :ref:`Bonsai` and :ref:`Miniscope-DAQ-QT-GUI`.
We support automatic commutation with the Miniscope DAQ and UCLA Miniscope v4 in :ref:`Bonsai`.

The UCLA Miniscope's own software Miniscope-DAQ-QT does not support automatic commutation.

You might be able to set up automatic commutation in other programmable applications that are able to acquire from the Miniscope DAQ and UCLA Miniscope v4 such as `Syntalos <https://syntalos.readthedocs.io/>`_ . For guidance, refer to the :ref:`remote_control` guide.

.. _Bonsai:

Expand Down Expand Up @@ -48,14 +51,3 @@ tether between a UCLA Miniscope v4 mounted on a freely moving animal and a UCLA
#. Run the workflow in Bonsai. If all above steps are correctly performed, the
commutator will follow miniscope rotations


..
.. _Miniscope-DAQ-QT-GUI:
Miniscope-DAQ-QT-GUI
#################################

This section outlines how to use Miniscope software to automate commutation of the coaxial
tether between a UCLA Miniscope v4 mounted on a freely moving animal and a UCLA Miniscope DAQ.

.. TODO:: document

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