Actually use chromsizes from the header

open2c · May 3, 2024 · 907a35f · 907a35f
1 parent 8c41a26
commit 907a35f
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/pairtools/lib/scaling.py b/pairtools/lib/scaling.py
@@ -388,7 +388,9 @@ def compute_scaling(
         pairs_df = pairs
 
     elif isinstance(pairs, str) or hasattr(pairs, "buffer") or hasattr(pairs, "peek"):
-        pairs_df, _, _ = pairsio.read_pairs(pairs, nproc=nproc_in, chunksize=chunksize)
+        pairs_df, _, chromsizes = pairsio.read_pairs(
+            pairs, nproc=nproc_in, chunksize=chunksize
+        )
     else:
         raise ValueError(
             "pairs must be either a path to a pairs file or a pd.DataFrame"