Code

Parse2 update (#99)#109

Code

Merged

agalitsyna merged 18 commits intopre0.4.0open2c/pairtools:pre0.4.0from parse2open2c/pairtools:parse2Copy head branch name to clipboardApr 11, 2022

+3,383-1,684

Commits

Commits on Jul 21, 2021

• pysam transfer of parse

  agalitsyna

  committed
  42e4a82

Commits on Nov 25, 2021

• Parse (update): backend transfer to pysam.

  Show description for a9658c2
  agalitsyna

  committed
  a9658c2

Commits on Dec 8, 2021

• pysam backend is now an option.

  agalitsyna

  committed
  230898a

• reformatting of parse-related files with black

  agalitsyna

  committed
  100144e

• Parse2 update (#99)

  Show description for 2ecaea3
  agalitsyna

  authored
  2ecaea3

• travis config updated to support pysam

  agalitsyna

  committed
  9916c4d

• pysam backend for parse2. Code structure improved.

  Show description for 8a3839f
  agalitsyna

  committed
  8a3839f

Commits on Mar 18, 2022

• pysam transfer completed.

  agalitsyna

  committed
  5a6db83

Commits on Mar 20, 2022

• parse2 transfer to pysam. Options finalized

  agalitsyna

  committed
  bdf4d30

• Cleanup.

  agalitsyna

  committed
  4573599

Commits on Mar 28, 2022

• input from stdin fix

  agalitsyna

  committed
  61dccc9

Commits on Apr 11, 2022

• Code refactoring. Rename forward/reverse to left/right. Simplify code and terminology.

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  committed
  3ffc100

• docs update. tests validated.

  agalitsyna

  committed
  a213166

• Parse2 docs update

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  committed
  ebaa530

• Figures added

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  c094fab

• smallfix

  agalitsyna

  committed
  7e83d6f

• Merge remote-tracking branch 'origin/pre0.4.0' into parse2

  agalitsyna

  committed
  1fbfd7d

• OrderedDict fix

  agalitsyna

  committed
  8be7c44