Hotfix 1.5.x - fix MNV coordinates #197
Merged
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The MNV positions were incorrect. Here's an example:
ClinVar ID: 266834
chr13:32316508:GAC:ATCGATCGAT
Decomposed variants
The coordinates are calculated with the start, and the index:
genomic start
+current index
=start
Previously the code was using the index for the right aligned string, which was "-------GAC"
32316508 + 9 (index of -------GAC) = 32316517 << incorrect
I've updated the code to use the index of the original "GAC"
32316508 + 2 (index of GAC) = 32316510 << correct