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Implement variant and sample statistics as Oskar analysis #18

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jtarraga opened this issue Sep 4, 2019 · 0 comments
Open

Implement variant and sample statistics as Oskar analysis #18

jtarraga opened this issue Sep 4, 2019 · 0 comments
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spark-analysis New Spark analysis

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jtarraga commented Sep 4, 2019

An important analysis that Oskar should offer is to compute variant and sample statistics based on Spark framework and taking Parquet files as input. Variant and sample statistics computation relies on VariantStatsTransformer and VariantSetStatsTransformer already implemented in Oskar.

The implementation will follow the Analysis and AnalysisExecutor schema.
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