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feat(deps): add kubeflow-training to workbench images #826

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andyatmiami
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@andyatmiami andyatmiami commented Dec 20, 2024

Description

This commit adds kubeflow-training[huggingface] to the following workbench images:

  • ./jupyter/datascience/ubi9-python-3.11
  • ./jupyter/pytorch/ubi9-python-3.11
  • ./jupyter/rocm/pytorch/ubi9-python-3.11
  • ./jupyter/trustyai/ubi9-python-3.11
  • ./codeserver/ubi9-python-3.11

This outcome comes with a slew of caveats and disclaimers:

  • Due to a dependency conflict, codeflare-sdk~=0.24.3 was also added to the following workbench images.
    • ./jupyter/datascience/ubi9-python-3.11
    • ./jupyter/pytorch/ubi9-python-3.11
    • ./jupyter/rocm/pytorch/ubi9-python-3.11
    • ./jupyter/trustyai/ubi9-python-3.11
  • ⚠️ In what may be a "controversial" decision, codeflare-sdk was NOT updated on other workbench images. Since 0.24.3 was a "one-off" release to unblock the kubeflow-training inclusion - the thought process here is that normal "sync" procedures on the next official release will standardize the codeflare-sdk dependency across all workbench images. This allows us to restrict the testing effort of this commit.
    • However, as of 2bd35f7, codeflare-sdk 0.24.3 was being pulled into our Pipfile.lock file - which is why you won't see Pipfile.lock addition of codeflare-sdk on this PR
  • jupyter/minmal/ubi9-python-3.11 was deliberately excluded from receiving kubeflow-training per discussions with team.
  • Due to dependency conflicts discovered tensorflow-based workbench images,kubeflow-training has not been added to those workbench images at this time. This decision was agreed to by affect stakeholders. Core blocking issue can be seen here:
  • Due to a dependency conflict, transformers = "==4.38.0" was also added to the./jupyter/trustyai/ubi9-python-3.11 workbench image after discussion with the developer that last worked on the trustyai image. While it certainly must be tested, there was no strict requirement that necessitated pinning the transformers dependency to 4.36.2 - and the huggingface extras now introduces a 4.38.0 constraint for transformers.

Related-to: https://issues.redhat.com/browse/RHOAIENG-12822

How Has This Been Tested?

  • Where possible, I manually executed the test- targets of the Makefile locally to ensure successful completion. This is handled automatically by the PR checks - but wanted the experience/knowledge of how to do this from my local machine

Merge criteria:

  • The commits are squashed in a cohesive manner and have meaningful messages.
  • Testing instructions have been added in the PR body (for PRs involving changes that are not immediately obvious).
  • The developer has manually tested the changes and verified that the changes work

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Skipping CI for Draft Pull Request.
If you want CI signal for your change, please convert it to an actual PR.
You can still manually trigger a test run with /test all

@andyatmiami andyatmiami force-pushed the chore/add-kfto-python-sdk branch 4 times, most recently from 429e683 to b2d3631 Compare December 20, 2024 17:00
],
"markers": "python_version >= '3.8'",
"version": "==2.1.0"
"version": "==1.2.0"
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Not immediately clear to me why this dependency got downgraded 🤔 I'm doing the pipenv install in a "controlled environment" (read: podman container running base/ubi9-python-3.11 )

Was initially updated here:
image

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@jstourac jstourac Jan 7, 2025

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Regarding this executing package - On my local system:

pipenv install
pipenv graph | less

Original:

ipykernel==6.29.5
├── comm [required: >=0.1.1, installed: 0.2.2]
│   └── traitlets [required: >=4, installed: 5.14.3]
├── debugpy [required: >=1.6.5, installed: 1.8.11]
├── ipython [required: >=7.23.1, installed: 8.31.0]
│   ├── decorator [required: Any, installed: 5.1.1]
│   ├── jedi [required: >=0.16, installed: 0.19.2]
│   │   └── parso [required: >=0.8.4,<0.9.0, installed: 0.8.4]
│   ├── matplotlib-inline [required: Any, installed: 0.1.7]
│   │   └── traitlets [required: Any, installed: 5.14.3]
│   ├── pexpect [required: >4.3, installed: 4.9.0]
│   │   └── ptyprocess [required: >=0.5, installed: 0.7.0]
│   ├── prompt_toolkit [required: >=3.0.41,<3.1.0, installed: 3.0.48]
│   │   └── wcwidth [required: Any, installed: 0.2.13]
│   ├── Pygments [required: >=2.4.0, installed: 2.18.0]
│   ├── stack-data [required: Any, installed: 0.6.3]
│   │   ├── asttokens [required: >=2.1.0, installed: 3.0.0]
│   │   ├── executing [required: >=1.2.0, installed: 2.1.0]
│   │   └── pure_eval [required: Any, installed: 0.2.3]
│   ├── traitlets [required: >=5.13.0, installed: 5.14.3]
│   └── typing_extensions [required: >=4.6, installed: 4.12.2]

Updated:

ipykernel==6.29.5
├── comm [required: >=0.1.1, installed: 0.2.2]
│   └── traitlets [required: >=4, installed: 5.14.3]
├── debugpy [required: >=1.6.5, installed: 1.8.11]
├── ipython [required: >=7.23.1, installed: 8.31.0]
│   ├── decorator [required: Any, installed: 5.1.1]
│   ├── jedi [required: >=0.16, installed: 0.19.2]
│   │   └── parso [required: >=0.8.4,<0.9.0, installed: 0.8.4]
│   ├── matplotlib-inline [required: Any, installed: 0.1.7]
│   │   └── traitlets [required: Any, installed: 5.14.3]
│   ├── pexpect [required: >4.3, installed: 4.9.0]
│   │   └── ptyprocess [required: >=0.5, installed: 0.7.0]
│   ├── prompt_toolkit [required: >=3.0.41,<3.1.0, installed: 3.0.48]
│   │   └── wcwidth [required: Any, installed: 0.2.13]
│   ├── Pygments [required: >=2.4.0, installed: 2.18.0]
│   ├── stack-data [required: Any, installed: 0.6.3]
│   │   ├── asttokens [required: >=2.1.0, installed: 3.0.0]
│   │   ├── executing [required: >=1.2.0, installed: 1.2.0]
│   │   └── pure_eval [required: Any, installed: 0.2.3]
│   ├── traitlets [required: >=5.13.0, installed: 5.14.3]
│   └── typing_extensions [required: >=4.6, installed: 4.12.2]

I don't get it neither. Here are the package changes. Only this change seem to be relevant from the functional POV.

I tried to trigger the generic GHA we have to check what is gonna be resolved there. Let's wait for the result, see here.

Edit: so, GHA put the version of the executing package back to 2.1.0, see here. Thus this looks like something totally env related and as another proof we should rely on the common way how to update these pipfile lock files.

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rely on the common way how to update these pipfile lock files

can you articulate what you mean by "the common way" ?

i attempted to try and "control" env-related issues by writing this utility to add/remove dependencies:

i.e. i wasn't just "running this on MacOS"...

not claiming my methodology is correct - just providing insight into how I did the work

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@andyatmiami andyatmiami Jan 8, 2025

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potential discrepancy... i had seen (from work on create-release GHA action) ubuntu 22 in use

image

so when I created notebook-utils - I based it off the ubuntu:22 image... but I see in other GHAs we are using ubuntu-latest which equates (as of end Sept) to ubuntu-24 for GHAs

I will update my util tomorrow and see how this executing package resolution behaves...

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can you articulate what you mean by "the common way" ?

Yeah, I meant just the GHA as it can be considered as the only standard way/env we have now that is common to all of us.

I based it off the ubuntu:22 image... but I see in other GHAs we are using ubuntu-latest which equates (as of end Sept) to ubuntu-24 for GHAs

Yeah, it can be it. As I wrote above - even in my local run, I see the same results as you do. So I suspect something behaves differently when we run in GHA. It would be great if we could dig down what is causing these differences, so that we don't need to trigger this via GHA. Maybe we could update the GHA to extract necessary logic to some script that can be run locally (both using same container image as GHA does). But I didn't check more and if we're gonna switch from pipenv to poetry or something else, this may be irrelevant work in the end 🤷

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Darn it.. dead end.. I forgot I changed the "base image" I am using to add/remote dependencies to base/ubi9-python-3.11

so using that as a reference... I have the following images on my system...

$ podman images
REPOSITORY                                  TAG                                                             IMAGE ID      CREATED       SIZE
...
quay.io/rh-ee-astonebe/workbench-images     base-ubi9-python-3.11-rhoaieng_16587_cache                      86dff33bd9cc  5 days ago    1.51 GB
docker.io/library/ubuntu                    24.10                                                           e40b6e31bd8c  7 weeks ago   82.6 MB

ubuntu:24.10 (simulating - i think/hope - what GHA would be doing)

$ podman run --platform linux/amd64 e40b6e31bd8 uname -a
Linux d8d2206ee6fe 6.11.3-200.fc40.aarch64 #1 SMP PREEMPT_DYNAMIC Thu Oct 10 22:53:48 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux

workbench-images:base-ubi9-python-3.11-rhoaieng_16587_cache

$ podman run --platform linux/amd64 86dff33bd9cc uname -a
Linux 7a999269de8e 6.11.3-200.fc40.aarch64 #1 SMP PREEMPT_DYNAMIC Thu Oct 10 22:53:48 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux

Based on the same underlying linux version.. so unlikely to be cause.. unless the baser base image of registry.access.redhat.com/ubi9/python-311 is doing something funky 🤔

Certainly I am biased (as I naturally like the tool I wrote) - but it feels more right to run the dependency resolution within a container that is actually used at runtime... Regardless, I need to rebuild stuff today... we can decide tomorrow AM if we wanna subsequently "zap" the Pipfile's with the GHA..

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HA! check this out (from me re-running my script)

image

So, annoyingly, it seems the difference here is one of pipenv install vs. pipenv lock

On prior runs of my script - as I was introducing net new packages - it was naturally doing a pipenv install

for this "re-run" - where the Pipfile already had the dependencies added - I added new functionality to notebook-utils to make it smart enough to do a pipenv lock if no new dependencies were being introduced.. and now we see executing == 2.1.0 pulled back in.

The GHA of course only does pipenv lock - so the discrepancy here appears (somewhat shockingly) to be related to the pipenv command ran?!?!

But, hey.. the outcome on this PR now doesn't require discussion (although its been fun) - and we all agree we wanna ditch pipenv ASAP - so we probably just shrug and move on 🤷‍♂️

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Certainly I am biased (as I naturally like the tool I wrote) - but it feels more right to run the dependency resolution within a container that is actually used at runtime...

+1, gha should do it the way you do, imo, pipenv lock in ubi container

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/test all

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/test notebook-jupyter-pytorch-ubi9-python-3-11-pr-image-mirror

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/test notebook-rocm-jupyter-pyt-ubi9-python-3-11-pr-image-mirror

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/test notebook-cuda-jupyter-ds-ubi9-python-3-11-pr-image-mirror

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/test notebooks-ubi9-e2e-tests

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/test codeserver-notebook-e2e-tests

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/test codeserver-notebook-e2e-tests

@andyatmiami andyatmiami force-pushed the chore/add-kfto-python-sdk branch from 70c151d to f9958e4 Compare January 2, 2025 14:08
@andyatmiami andyatmiami marked this pull request as ready for review January 6, 2025 18:13
@openshift-ci openshift-ci bot requested review from dibryant and paulovmr January 6, 2025 18:13
@andyatmiami andyatmiami force-pushed the chore/add-kfto-python-sdk branch 2 times, most recently from b8b16e3 to 8fd3a37 Compare January 8, 2025 18:02
This commit adds `kubeflow-training[huggingface]` to the following workbench images:
- `./jupyter/datascience/ubi9-python-3.11`
- `./jupyter/pytorch/ubi9-python-3.11`
- `./jupyter/rocm/pytorch/ubi9-python-3.11`
- `./jupyter/trustyai/ubi9-python-3.11`
- `./codeserver/ubi9-python-3.11`

This outcome comes with a slew of caveats and disclaimers:
- Due to a dependency conflict, `codeflare-sdk==0.24.3` was **also** pulled into the following workbench images.
	- `./jupyter/datascience/ubi9-python-3.11`
	- `./jupyter/pytorch/ubi9-python-3.11`
	- `./jupyter/rocm/pytorch/ubi9-python-3.11`
	- `./jupyter/trustyai/ubi9-python-3.11`
- ⚠️ In what may be a "controversial" decision, `codeflare-sdk` was **NOT** updated on other workbench images.  Since `0.24.3` was a "one-off" release to unblock the `kubeflow-training` inclusion - the thought process here is that normal "sync" procedures on the next official release will standardize the `codeflare-sdk` dependency across all workbench images.  This allows us to restrict the testing effort of this commit.
    - However, as of opendatahub-io@2bd35f7, `codeflare-sdk` `0.24.3` was being pulled into our `Pipfile.lock` file - which is why you won't see `Pipfile.lock` addition of `codeflare-sdk` on **this PR**
- `jupyter/minmal/ubi9-python-3.11` was deliberately excluded from receiving `kubeflow-training` per discussions with team.
- Due to dependency conflicts discovered `tensorflow`-based workbench images,`kubeflow-training` has not been added to those workbench images at this time.  This decision was agreed to by affect stakeholders.  Core blocking issue can be seen here:
	- See #2328 in https://github.com/onnx/tensorflow-onnx/issues
- Due to a dependency conflict, `transformers = "==4.38.0"` was **also** added to the`./jupyter/trustyai/ubi9-python-3.11` workbench image after discussion with the developer that last worked on the `trustyai` image.  While it certainly must be tested, there was no strict requirement that necessitated pinning the `transformers` dependency to `4.36.2` - and the `huggingface` `extras` now introduces a `4.38.0` constraint for `transformers`.

Related-to: https://issues.redhat.com/browse/RHOAIENG-12822
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Looks good to me. I've checked the images generated from this PR: https://quay.io/repository/rh-ee-astonebe/workbench-images?tab=tags

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/test notebook-rocm-jupyter-pyt-ubi9-python-3-11-pr-image-mirror

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atheo89 commented Jan 9, 2025

/lgtm

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jstourac commented Jan 9, 2025

/lgtm

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/approve

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[APPROVALNOTIFIER] This PR is APPROVED

This pull-request has been approved by: andyatmiami

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/override ci/prow/notebook-rocm-jupyter-tf-ubi9-python-3-11-pr-image-mirror ci/prow/codeserver-notebook-e2e-tests
ci/prow/images ci/prow/notebooks-ubi9-e2e-tests ci/prow/rocm-notebooks-e2e-tests

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@andyatmiami: Overrode contexts on behalf of andyatmiami: ci/prow/codeserver-notebook-e2e-tests, ci/prow/notebook-rocm-jupyter-tf-ubi9-python-3-11-pr-image-mirror

In response to this:

/override ci/prow/notebook-rocm-jupyter-tf-ubi9-python-3-11-pr-image-mirror ci/prow/codeserver-notebook-e2e-tests
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/override ci/prow/rocm-notebooks-e2e-tests

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/override ci/prow/notebooks-ubi9-e2e-tests

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/override ci/prow/images

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/override "build (rocm-jupyter-tensorflow-ubi9-python-3.11) / build"

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@andyatmiami: Overrode contexts on behalf of andyatmiami: build (rocm-jupyter-tensorflow-ubi9-python-3.11) / build

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/override "ci/prow/build (rocm-jupyter-tensorflow-ubi9-python-3.11) / build"

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@andyatmiami: /override requires failed status contexts, check run or a prowjob name to operate on.
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/override "build (cuda-jupyter-tensorflow-ubi9-python-3.11) / build"

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/override "ci/prow/force failure to debug"

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  • ci/prow/notebook-jupyter-pytorch-ubi9-python-3-11-pr-image-mirror
  • ci/prow/notebook-jupyter-trustyai-ubi9-python-3-11-pr-image-mirror
  • ci/prow/notebook-rocm-jupyter-pyt-ubi9-python-3-11-pr-image-mirror
  • ci/prow/notebook-rocm-jupyter-tf-ubi9-python-3-11-pr-image-mirror
  • ci/prow/notebooks-ubi9-e2e-tests
  • ci/prow/rocm-notebooks-e2e-tests
  • pull-ci-opendatahub-io-notebooks-2023a-images
  • pull-ci-opendatahub-io-notebooks-main-codeserver-notebook-e2e-tests
  • pull-ci-opendatahub-io-notebooks-main-notebook-codeserver-ubi9-python-3-11-pr-image-mirror
  • pull-ci-opendatahub-io-notebooks-main-notebook-cuda-jupyter-ds-ubi9-python-3-11-pr-image-mirror
  • pull-ci-opendatahub-io-notebooks-main-notebook-cuda-jupyter-tf-ubi9-python-3-11-pr-image-mirror
  • pull-ci-opendatahub-io-notebooks-main-notebook-jupyter-pytorch-ubi9-python-3-11-pr-image-mirror
  • pull-ci-opendatahub-io-notebooks-main-notebook-jupyter-trustyai-ubi9-python-3-11-pr-image-mirror
  • pull-ci-opendatahub-io-notebooks-main-notebook-rocm-jupyter-pyt-ubi9-python-3-11-pr-image-mirror
  • pull-ci-opendatahub-io-notebooks-main-notebook-rocm-jupyter-tf-ubi9-python-3-11-pr-image-mirror
  • pull-ci-opendatahub-io-notebooks-main-notebooks-ubi9-e2e-tests
  • pull-ci-opendatahub-io-notebooks-main-rocm-notebooks-e2e-tests
  • tide

If you are trying to override a checkrun that has a space in it, you must put a double quote on the context.

In response to this:

/override "ci/prow/force failure to debug"

Instructions for interacting with me using PR comments are available here. If you have questions or suggestions related to my behavior, please file an issue against the kubernetes-sigs/prow repository.

@openshift-merge-bot openshift-merge-bot bot merged commit d8917bf into opendatahub-io:main Jan 9, 2025
22 of 24 checks passed
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6 participants