Journaling bloom filter crate in util

util/Cargo.toml

@@ -34,6 +34,7 @@ using_queue = { path = "using_queue" }
 table = { path = "table" }
 ansi_term = "0.7"
 tiny-keccak= "1.0"
+ethcore-bloom-journal = { path = "bloom" }
 
 [features]
 default = []

util/bloom/Cargo.toml

@@ -0,0 +1,9 @@
+[project]
+name = "ethcore-bloom-journal"
+version = "0.1.0"
+authors = ["Ethcore<admin@ethcore.io>"]
+description = "Journaling bloom filter"
+license = "GPL3"
+
+[lib]
+path = "src/lib.rs"

util/bloom/src/lib.rs

@@ -0,0 +1,246 @@
+// Copyright 2015, 2016 Ethcore (UK) Ltd.
+// This file is part of Parity.
+
+// Parity is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General Public License as published by
+// the Free Software Foundation, either version 3 of the License, or
+// (at your option) any later version.
+
+// Parity is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU General Public License for more details.
+
+// You should have received a copy of the GNU General Public License
+// along with Parity.  If not, see <http://www.gnu.org/licenses/>.
+
+use std::cmp;
+use std::f64;
+use std::hash::{Hash, Hasher, SipHasher};
+use std::collections::HashSet;
+
+/// BitVec structure with journalling
+/// Every time any of the blocks is getting set it's index is tracked
+/// and can be then drained by `drain` method
+struct BitVecJournal {
+    elems: Vec<u64>,
+    journal: HashSet<usize>,
+}
+
+impl BitVecJournal {
+	pub fn new(size: usize) -> BitVecJournal {
+		let extra = if size % 8 > 0  { 1 } else { 0 };
+		BitVecJournal {
+			elems: vec![0u64; size / 8 + extra],
+			journal: HashSet::new(),
+		}
+	}
+
+	pub fn from_parts(parts: &[u64]) -> BitVecJournal {
+		BitVecJournal {
+			elems: parts.to_vec(),
+			journal: HashSet::new(),
+		}
+	}
+
+	pub fn set(&mut self, index: usize) {
+		let e_index = index / 64;
+		let bit_index = index % 64;
+		let val = self.elems.get_mut(e_index).unwrap();
+		*val |= 1u64 << bit_index;
+		self.journal.insert(e_index);
+	}
+
+	pub fn get(&self, index: usize) -> bool {
+		let e_index = index / 64;
+		let bit_index = index % 64;
+		self.elems[e_index] & (1 << bit_index) != 0
+	}
+
+	pub fn drain(&mut self) -> Vec<(usize, u64)> {
+		let journal = self.journal.drain().collect::<Vec<usize>>();
+		journal.iter().map(|idx| (*idx, self.elems[*idx])).collect::<Vec<(usize, u64)>>()
+	}
+
+	pub fn how_full(&self) -> f64 {
+		self.elems.iter().fold(0u64, |acc, e| acc + e.count_ones() as u64) as f64 / (self.elems.len() * 64) as f64
+	}
+}
+
+/// Bloom filter structure
+pub struct Bloom {
+	bitmap: BitVecJournal,
+	bitmap_bits: u64,
+	k_num: u32,
+	sips: [SipHasher; 2],
+}
+
+impl Bloom {
+	/// Create a new bloom filter structure.
+	/// bitmap_size is the size in bytes (not bits) that will be allocated in memory
+	/// items_count is an estimation of the maximum number of items to store.
+	pub fn new(bitmap_size: usize, items_count: usize) -> Bloom {
+		assert!(bitmap_size > 0 && items_count > 0);
+		let bitmap_bits = (bitmap_size as u64) * 8u64;
+		let k_num = Bloom::optimal_k_num(bitmap_bits, items_count);
+		let bitmap = BitVecJournal::new(bitmap_bits as usize);
+		let sips = [Bloom::sip_new(), Bloom::sip_new()];
+		Bloom {
+			bitmap: bitmap,
+			bitmap_bits: bitmap_bits,
+			k_num: k_num,
+			sips: sips,
+		}
+	}
+
+	/// Initializes bloom filter from saved state
+	pub fn from_parts(parts: &[u64], k_num: u32) -> Bloom {
+		let bitmap_size = parts.len()*8;
+		let bitmap_bits = (bitmap_size as u64) * 8u64;
+		let bitmap = BitVecJournal::from_parts(parts);
+		let sips = [Bloom::sip_new(), Bloom::sip_new()];
+		Bloom {
+			bitmap: bitmap,
+			bitmap_bits: bitmap_bits,
+			k_num: k_num,
+			sips: sips,
+		}
+	}
+
+	/// Create a new bloom filter structure.
+	/// items_count is an estimation of the maximum number of items to store.
+	/// fp_p is the wanted rate of false positives, in ]0.0, 1.0[
+	pub fn new_for_fp_rate(items_count: usize, fp_p: f64) -> Bloom {
+		let bitmap_size = Bloom::compute_bitmap_size(items_count, fp_p);
+		Bloom::new(bitmap_size, items_count)
+	}
+
+	/// Compute a recommended bitmap size for items_count items
+	/// and a fp_p rate of false positives.
+	/// fp_p obviously has to be within the ]0.0, 1.0[ range.
+	pub fn compute_bitmap_size(items_count: usize, fp_p: f64) -> usize {
+		assert!(items_count > 0);
+		assert!(fp_p > 0.0 && fp_p < 1.0);
+		let log2 = f64::consts::LN_2;
+		let log2_2 = log2 * log2;
+		((items_count as f64) * f64::ln(fp_p) / (-8.0 * log2_2)).ceil() as usize
+	}
+
+	/// Records the presence of an item.
+	pub fn set<T>(&mut self, item: T)
+		where T: Hash
+	{
+		let mut hashes = [0u64, 0u64];
+		for k_i in 0..self.k_num {
+			let bit_offset = (self.bloom_hash(&mut hashes, &item, k_i) % self.bitmap_bits) as usize;
+			self.bitmap.set(bit_offset);
+		}
+	}
+
+	/// Check if an item is present in the set.
+	/// There can be false positives, but no false negatives.
+	pub fn check<T>(&self, item: T) -> bool
+		where T: Hash
+	{
+		let mut hashes = [0u64, 0u64];
+		for k_i in 0..self.k_num {
+			let bit_offset = (self.bloom_hash(&mut hashes, &item, k_i) % self.bitmap_bits) as usize;
+			if !self.bitmap.get(bit_offset) {
+				return false;
+			}
+		}
+		true
+	}
+
+	/// Return the number of bits in the filter
+	pub fn number_of_bits(&self) -> u64 {
+		self.bitmap_bits
+	}
+
+	/// Return the number of hash functions used for `check` and `set`
+	pub fn number_of_hash_functions(&self) -> u32 {
+		self.k_num
+	}
+
+	fn optimal_k_num(bitmap_bits: u64, items_count: usize) -> u32 {
+		let m = bitmap_bits as f64;
+		let n = items_count as f64;
+		let k_num = (m / n * f64::ln(2.0f64)).ceil() as u32;
+		cmp::max(k_num, 1)
+	}
+
+	fn bloom_hash<T>(&self, hashes: &mut [u64; 2], item: &T, k_i: u32) -> u64
+		where T: Hash
+	{
+		if k_i < 2 {
+			let sip = &mut self.sips[k_i as usize].clone();
+			item.hash(sip);
+			let hash = sip.finish();
+			hashes[k_i as usize] = hash;
+			hash
+		} else {
+			hashes[0].wrapping_add((k_i as u64).wrapping_mul(hashes[1]) % 0xffffffffffffffc5)
+		}
+	}
+
+	fn sip_new() -> SipHasher {
+		SipHasher::new()
+	}
+
+	/// Drains the bloom journal returning the updated bloom part
+	pub fn drain_journal(&mut self) -> BloomJournal {
+		BloomJournal {
+			entries: self.bitmap.drain(),
+			hash_functions: self.k_num,
+		}
+	}
+
+	/// Returns the ratio of set bits in the bloom filter to the total bits
+	pub fn how_full(&self) -> f64 {
+		self.bitmap.how_full()
+	}
+}
+
+/// Bloom journal
+/// Returns the tuple of (bloom part index, bloom part value) where each one is representing
+/// an index of bloom parts that was updated since the last drain
+pub struct BloomJournal {
+    pub hash_functions: u32,
+    pub entries: Vec<(usize, u64)>,
+}
+
+
+#[cfg(test)]
+mod tests {
+	use super::Bloom;
+
+	#[test]
+	fn bloom_test_set() {
+		let mut bloom = Bloom::new(10, 80);
+		let key = vec![115u8, 99];
+		assert!(!bloom.check(&key));
+		bloom.set(&key);
+		assert!(bloom.check(&key));
+	}
+
+	#[test]
+	fn bloom_journalling() {
+		let initial = vec![0u64; 8];
+		let mut bloom = Bloom::from_parts(&initial, 3);
+		bloom.set(&vec![5u8, 4]);
+		let drain = bloom.drain_journal();
+
+		assert_eq!(2, drain.entries.len())
+	}
+
+	#[test]
+	fn bloom_howfull() {
+		let initial = vec![0u64; 8];
+		let mut bloom = Bloom::from_parts(&initial, 3);
+		bloom.set(&vec![5u8, 4]);
+
+		let full = bloom.how_full();
+		// 2/8/64 = 0.00390625
+		assert!(full >= 0.0039f64 && full <= 0.004f64);
+	}
+}