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Update tutorials #499

Merged
merged 16 commits into from
Feb 14, 2023
Merged

Update tutorials #499

merged 16 commits into from
Feb 14, 2023

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mattwthompson
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@mattwthompson mattwthompson commented Feb 13, 2023

Description

This takes #485 and runs it with upstream permissions

Todos

Notable points that this PR has either accomplished or will accomplish.

  • Ensure notebooks can run
  • Work around incompatible ForceBalance versions
  • Update JSON files with new APIs

Questions

Status

  • Ready to go

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codecov bot commented Feb 13, 2023

Codecov Report

Merging #499 (c6cdbe8) into main (66adc50) will not change coverage.
The diff coverage is n/a.

Additional details and impacted files

@mattwthompson
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There have been a number of module changes since the shipped JSON files were generated. I'm going to need to get the simulations up and running on a secondary machine to regenerate the data.

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@mattwthompson mattwthompson marked this pull request as ready for review February 14, 2023 15:13
@mattwthompson mattwthompson changed the title Upstream 485 Update tutorials Feb 14, 2023
@@ -10,15 +10,15 @@ dependencies:
# Testing and development
- pytest
- pytest-cov
- codecov
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There's no need to install the codecov package now that their action is used. nbval is used to run tutorials, which only run on half of the matrix but is light enough that there is no need to install it inside of a conditional

- requests-mock # For testing http requests.
- smirnoff-plugins # For testing custom nonbonded forces
- coverage >=4.4

# Standard dependencies
- openff-toolkit >=0.11.0
- openmm =8
- pymbar >=4
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The version here is enforced later in the workflow

@mattwthompson mattwthompson merged commit 35f9316 into main Feb 14, 2023
@mattwthompson mattwthompson deleted the upstream-485 branch February 14, 2023 17:22
@mattwthompson mattwthompson mentioned this pull request Feb 14, 2023
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2 participants