[PRE REVIEW]: pykoop: a Python Library for Koopman Operator Approximation

[editorialbot]

Submitting author: @sdahdah (Steven Dahdah)
Repository: https://github.com/decargroup/pykoop
Branch with paper.md (empty if default branch): paper
Version: v2.0.1
Editor: @gkthiruvathukal
Reviewers: Pending
Managing EiC: Arfon Smith

Status

Status badge code:

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[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1098/rspa.2022.0162 is OK
- 10.1088/2632-2153/ad45b0 is OK
- 10.5281/zenodo.5576490 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Scikit-learn: Machine Learning in Python
- No DOI given, and none found for title: DLKoopman: A deep learning software package for Ko...
- No DOI given, and none found for title: \textttMachine-Learning-Dynamical-Systems/kooplear...
- No DOI given, and none found for title: Forward-Backward Extended DMD with an Asymptotic S...
- No DOI given, and none found for title: Uncertainty Modelling and Robust Observer Synthesi...
- No DOI given, and none found for title: Asymptotically Stable Data-Driven Koopman Operator...

❌ MISSING DOIs

- 10.21105/joss.05881 may be a valid DOI for title: PyKoopman: A Python Package for Data-Driven Approx...

❌ INVALID DOIs

- None

[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.12 s (563.4 files/s, 189093.9 lines/s)
--------------------------------------------------------------------------------
Language                      files          blank        comment           code
--------------------------------------------------------------------------------
Python                           34           1556           5402          11480
Jupyter Notebook                  8              0           2246            639
reStructuredText                  6            176            228            297
Markdown                          6             70              0            235
YAML                              7              1              5            159
TeX                               2             16              0            153
Bourne Again Shell                1             11             38             34
DOS Batch                         1              8              1             26
INI                               2              1              0             19
make                              1              4              7              9
--------------------------------------------------------------------------------
SUM:                             68           1843           7927          13051
--------------------------------------------------------------------------------

Commit count by author:

   622	Steven Dahdah
     1	James Forbes

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 615

✅ The paper includes a Statement of need section

[editorialbot]

License info:

✅ License found: MIT License (Valid open source OSI approved license)

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

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[arfon]

@sdahdah - thanks for your submission to JOSS. We're currently managing a large backlog of submissions and the editor most appropriate for your area is already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!

If you want to fix the DOIs (noting that @editorialbot's suggestions are not always right), you can, then use the following commands (one at a time, as the first line of a new comment) to regenerate the PDF and check the references.

@editorialbot generate pdf
@editorialbot check references

[sdahdah]

Thank you, I will fix the DOIs in the meantime.

[sdahdah]

@editorialbot generate pdf

[editorialbot]

⚠️ An error happened when generating the pdf.

[sdahdah]

@editorialbot generate pdf

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

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Similarity score: 0.7618

dfba: Software for efficient simulation of dynamic flux-balance analysis models in Python
Submitting author: @davidtourigny
Handling editor: @marcosvital (Active)
Reviewers: @jdbrunner, @pstjohn, @synchon
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Simulation Decomposition in Python
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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[sdahdah]

@editorialbot check references

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.21105/joss.05881 is OK
- 10.1098/rspa.2022.0162 is OK
- 10.1088/2632-2153/ad45b0 is OK
- 10.48550/arXiv.2403.10623 is OK
- 10.48550/arXiv.2410.01057 is OK
- 10.48550/arXiv.2408.16846 is OK
- 10.5281/zenodo.5576490 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Scikit-learn: Machine Learning in Python
- No DOI given, and none found for title: DLKoopman: A deep learning software package for Ko...
- No DOI given, and none found for title: Machine-Learning-Dynamical-Systems/kooplearn v1.1....

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None

[sdahdah]

The remaining references do not have DOIs as far as I can tell.

[danielskatz]

👋 @diehlpk - Do you think you could edit this submission?

[danielskatz]

@editorialbot invite @diehlpk as editor

[editorialbot]

Invitation to edit this submission sent!

[danielskatz]

👋 @drvinceknight - Do you think you could edit this submission?

[danielskatz]

@editorialbot invite @drvinceknight as editor

[editorialbot]

Invitation to edit this submission sent!

[danielskatz]

👋 @diehlpk & @drvinceknight - pinging you again...

[diehlpk]

@danielskatz I need to pass on this one due to having too many papers assigned already.

[danielskatz]

@gkthiruvathukal - Would you be able to edit this submission (since another of yours is just completing)?

[danielskatz]

@editorialbot invite @gkthiruvathukal as editor

[editorialbot]

Invitation to edit this submission sent!

[gkthiruvathukal]

Sure, @danielskatz!

[danielskatz]

@editorialbot assign @gkthiruvathukal as editor

[editorialbot]

Assigned! @gkthiruvathukal is now the editor

[drvinceknight]

Not sure how I missed this @danielskatz, sorry, glad you found an editor.