Bug fix: enable dcm2niix json sidecar generation #874
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| name: matlab | |
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_call: | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| type: boolean | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| required: false | |
| default: false | |
| jobs: | |
| Matlab-Unit-Tests: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| TEST_ECAT_PATH: ${{ github.workspace }}/ecat_validation/synthetic_ecat_integer.v.gz | |
| MATLAB_CODE_PATH: ${{ github.workspace }}/matlab/ | |
| METADATA_PATH: ${{ github.workspace }}/metadata/ | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/checkout@v2 | |
| - name: Debug | |
| uses: mxschmitt/action-tmate@v3 | |
| if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
| timeout-minutes: 15 | |
| with: | |
| limit-access-to-actor: true | |
| # matlab not supported on MacOS!! at this time | |
| - name: Perform setup-matlab | |
| uses: matlab-actions/setup-matlab@v1 | |
| if: matrix.os == 'ubuntu-latest' | |
| # Again only running this on ubuntu | |
| - name: Add Matlab Code Folder to Path and Run Tests | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: | | |
| addpath('${{ env.MATLAB_CODE_PATH }}'); | |
| addpath('${{ env.MATLAB_CODE_PATH }}/unit_tests'); | |
| addpath('${{ env.MATLAB_CODE_PATH }}/template_txt'); | |
| addpath('${{ env.TEST_ECAT_PATH }}'); | |
| addpath('${{ env.METADATA_PATH }}'); | |
| ecat2nii_test | |
| if: matrix.os == 'ubuntu-latest' |