add output adata compression to harmonypy

openproblems-bio · Dec 18, 2024 · 376f5de · 376f5de
1 parent 736b529
commit 376f5de
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/src/methods/harmonypy/script.py b/src/methods/harmonypy/script.py
@@ -41,5 +41,4 @@
 
 print("Write output AnnData to file", flush=True)
 
-# TODO need compression to gz or not?
-out_adata.write_h5ad(par["output"])
+out_adata.write_h5ad(par["output"], compression="gzip")