Integrate translog cleanup with snapshot deletion and fix primary ter…

…m deletion logic (#15657)

---------

Signed-off-by: Sachin Kale <kalsac@amazon.com>
Co-authored-by: Sachin Kale <kalsac@amazon.com>
(cherry picked from commit 7b0846e)
Signed-off-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>

server/src/internalClusterTest/java/org/opensearch/snapshots/DeleteSnapshotITV2.java → server/src/internalClusterTest/java/org/opensearch/snapshots/DeleteSnapshotV2IT.java

@@ -32,7 +32,7 @@
 import static org.hamcrest.Matchers.lessThan;
 
 @OpenSearchIntegTestCase.ClusterScope(scope = OpenSearchIntegTestCase.Scope.TEST, numDataNodes = 0)
-public class DeleteSnapshotITV2 extends AbstractSnapshotIntegTestCase {
+public class DeleteSnapshotV2IT extends AbstractSnapshotIntegTestCase {
 
     private static final String REMOTE_REPO_NAME = "remote-store-repo-name";
 
@@ -276,9 +276,11 @@ public void testRemoteStoreCleanupForDeletedIndexForSnapshotV2() throws Exceptio
         Path indexPath = Path.of(String.valueOf(remoteStoreRepoPath), indexUUID);
         Path shardPath = Path.of(String.valueOf(indexPath), "0");
         Path segmentsPath = Path.of(String.valueOf(shardPath), "segments");
+        Path translogPath = Path.of(String.valueOf(shardPath), "translog");
 
         // Get total segments remote store directory file count for deleted index and shard 0
         int segmentFilesCountBeforeDeletingSnapshot1 = RemoteStoreBaseIntegTestCase.getFileCount(segmentsPath);
+        int translogFilesCountBeforeDeletingSnapshot1 = RemoteStoreBaseIntegTestCase.getFileCount(translogPath);
 
         RemoteStoreSettings.setPinnedTimestampsLookbackInterval(TimeValue.ZERO);
 
@@ -312,6 +314,13 @@ public void testRemoteStoreCleanupForDeletedIndexForSnapshotV2() throws Exceptio
                 assertThat(RemoteStoreBaseIntegTestCase.getFileCount(segmentsPath), lessThan(segmentFilesCountAfterDeletingSnapshot1));
             } catch (Exception e) {}
         }, 60, TimeUnit.SECONDS);
+
+        assertBusy(() -> {
+            try {
+                assertThat(RemoteStoreBaseIntegTestCase.getFileCount(translogPath), lessThan(translogFilesCountBeforeDeletingSnapshot1));
+            } catch (Exception e) {}
+        }, 60, TimeUnit.SECONDS);
+
     }
 
     private Settings snapshotV2Settings(Path remoteStoreRepoPath) {

server/src/main/java/org/opensearch/index/store/RemoteSegmentStoreDirectory.java

@@ -412,7 +412,7 @@ static long getGeneration(String[] filenameTokens) {
 
         public static long getTimestamp(String filename) {
             String[] filenameTokens = filename.split(SEPARATOR);
-            return RemoteStoreUtils.invertLong(filenameTokens[6]);
+            return RemoteStoreUtils.invertLong(filenameTokens[filenameTokens.length - 2]);
         }
 
         public static Tuple<String, String> getNodeIdByPrimaryTermAndGen(String filename) {

server/src/main/java/org/opensearch/index/store/RemoteSegmentStoreDirectoryFactory.java

@@ -121,4 +121,8 @@ public Directory newDirectory(String repositoryName, String indexUUID, ShardId s
         }
     }
 
+    public Supplier<RepositoriesService> getRepositoriesService() {
+        return this.repositoriesService;
+    }
+
 }

server/src/main/java/org/opensearch/index/translog/RemoteFsTimestampAwareTranslog.java

@@ -8,6 +8,7 @@
 
 package org.opensearch.index.translog;
 
+import org.apache.logging.log4j.LogManager;
 import org.apache.logging.log4j.Logger;
 import org.opensearch.cluster.service.ClusterService;
 import org.opensearch.common.blobstore.BlobMetadata;
@@ -33,6 +34,7 @@
 import java.util.Optional;
 import java.util.Set;
 import java.util.TreeSet;
+import java.util.concurrent.atomic.AtomicLong;
 import java.util.function.BooleanSupplier;
 import java.util.function.LongConsumer;
 import java.util.function.LongSupplier;
@@ -52,10 +54,13 @@
  */
 public class RemoteFsTimestampAwareTranslog extends RemoteFsTranslog {
 
+    private static Logger staticLogger = LogManager.getLogger(RemoteFsTimestampAwareTranslog.class);
     private final Logger logger;
     private final Map<Long, String> metadataFilePinnedTimestampMap;
     // For metadata files, with no min generation in the name, we cache generation data to avoid multiple reads.
     private final Map<String, Tuple<Long, Long>> oldFormatMetadataFileGenerationMap;
+    private final Map<String, Tuple<Long, Long>> oldFormatMetadataFilePrimaryTermMap;
+    private final AtomicLong minPrimaryTermInRemote = new AtomicLong(Long.MAX_VALUE);
 
     public RemoteFsTimestampAwareTranslog(
         TranslogConfig config,
@@ -86,6 +91,7 @@ public RemoteFsTimestampAwareTranslog(
         logger = Loggers.getLogger(getClass(), shardId);
         this.metadataFilePinnedTimestampMap = new HashMap<>();
         this.oldFormatMetadataFileGenerationMap = new HashMap<>();
+        this.oldFormatMetadataFilePrimaryTermMap = new HashMap<>();
     }
 
     @Override
@@ -165,7 +171,11 @@ public void onResponse(List<BlobMetadata> blobMetadata) {
                         return;
                     }
 
-                    List<String> metadataFilesToBeDeleted = getMetadataFilesToBeDeleted(metadataFiles);
+                    List<String> metadataFilesToBeDeleted = getMetadataFilesToBeDeleted(
+                        metadataFiles,
+                        metadataFilePinnedTimestampMap,
+                        logger
+                    );
 
                     // If index is not deleted, make sure to keep latest metadata file
                     if (indexDeleted == false) {
@@ -209,7 +219,7 @@ public void onResponse(List<BlobMetadata> blobMetadata) {
                         oldFormatMetadataFileGenerationMap.keySet().retainAll(metadataFilesNotToBeDeleted);
 
                         // Delete stale primary terms
-                        deleteStaleRemotePrimaryTerms(metadataFiles);
+                        deleteStaleRemotePrimaryTerms(metadataFilesNotToBeDeleted);
                     } else {
                         remoteGenerationDeletionPermits.release(REMOTE_DELETION_PERMITS);
                     }
@@ -259,8 +269,16 @@ protected Set<Long> getGenerationsToBeDeleted(
         return generationsToBeDeleted;
     }
 
-    // Visible for testing
     protected List<String> getMetadataFilesToBeDeleted(List<String> metadataFiles) {
+        return getMetadataFilesToBeDeleted(metadataFiles, metadataFilePinnedTimestampMap, logger);
+    }
+
+    // Visible for testing
+    protected static List<String> getMetadataFilesToBeDeleted(
+        List<String> metadataFiles,
+        Map<Long, String> metadataFilePinnedTimestampMap,
+        Logger logger
+    ) {
         Tuple<Long, Set<Long>> pinnedTimestampsState = RemoteStorePinnedTimestampService.getPinnedTimestamps();
 
         // Keep files since last successful run of scheduler
@@ -351,27 +369,153 @@ protected Tuple<Long, Long> getMinMaxTranslogGenerationFromMetadataFile(
         }
     }
 
+    private void deleteStaleRemotePrimaryTerms(List<String> metadataFiles) {
+        deleteStaleRemotePrimaryTerms(
+            metadataFiles,
+            translogTransferManager,
+            oldFormatMetadataFilePrimaryTermMap,
+            minPrimaryTermInRemote,
+            logger
+        );
+    }
+
     /**
      * This method must be called only after there are valid generations to delete in trimUnreferencedReaders as it ensures
      * implicitly that minimum primary term in latest translog metadata in remote store is the current primary term.
      * <br>
      * This will also delete all stale translog metadata files from remote except the latest basis the metadata file comparator.
      */
-    private void deleteStaleRemotePrimaryTerms(List<String> metadataFiles) {
+    protected static void deleteStaleRemotePrimaryTerms(
+        List<String> metadataFiles,
+        TranslogTransferManager translogTransferManager,
+        Map<String, Tuple<Long, Long>> oldFormatMetadataFilePrimaryTermMap,
+        AtomicLong minPrimaryTermInRemoteAtomicLong,
+        Logger logger
+    ) {
         // The deletion of older translog files in remote store is on best-effort basis, there is a possibility that there
         // are older files that are no longer needed and should be cleaned up. In here, we delete all files that are part
         // of older primary term.
-        if (olderPrimaryCleaned.trySet(Boolean.TRUE)) {
-            if (metadataFiles.isEmpty()) {
-                logger.trace("No metadata is uploaded yet, returning from deleteStaleRemotePrimaryTerms");
-                return;
+        if (metadataFiles.isEmpty()) {
+            logger.trace("No metadata is uploaded yet, returning from deleteStaleRemotePrimaryTerms");
+            return;
+        }
+        Optional<Long> minPrimaryTermFromMetadataFiles = metadataFiles.stream().map(file -> {
+            try {
+                return getMinMaxPrimaryTermFromMetadataFile(file, translogTransferManager, oldFormatMetadataFilePrimaryTermMap).v1();
+            } catch (IOException e) {
+                return Long.MAX_VALUE;
+            }
+        }).min(Long::compareTo);
+        // First we delete all stale primary terms folders from remote store
+        Long minPrimaryTermInRemote = getMinPrimaryTermInRemote(minPrimaryTermInRemoteAtomicLong, translogTransferManager, logger);
+        if (minPrimaryTermFromMetadataFiles.get() > minPrimaryTermInRemote) {
+            translogTransferManager.deletePrimaryTermsAsync(minPrimaryTermFromMetadataFiles.get());
+            minPrimaryTermInRemoteAtomicLong.set(minPrimaryTermFromMetadataFiles.get());
+        } else {
+            logger.debug(
+                "Skipping primary term cleanup. minimumReferencedPrimaryTerm = {}, minPrimaryTermInRemote = {}",
+                minPrimaryTermFromMetadataFiles.get(),
+                minPrimaryTermInRemote
+            );
+        }
+    }
+
+    private static Long getMinPrimaryTermInRemote(
+        AtomicLong minPrimaryTermInRemote,
+        TranslogTransferManager translogTransferManager,
+        Logger logger
+    ) {
+        if (minPrimaryTermInRemote.get() == Long.MAX_VALUE) {
+            try {
+                Set<Long> primaryTermsInRemote = translogTransferManager.listPrimaryTermsInRemote();
+                if (primaryTermsInRemote.isEmpty() == false) {
+                    Optional<Long> minPrimaryTerm = primaryTermsInRemote.stream().min(Long::compareTo);
+                    minPrimaryTerm.ifPresent(minPrimaryTermInRemote::set);
+                }
+            } catch (IOException e) {
+                logger.error("Exception while listing primary terms in remote translog", e);
+            }
+        }
+        return minPrimaryTermInRemote.get();
+    }
+
+    protected static Tuple<Long, Long> getMinMaxPrimaryTermFromMetadataFile(
+        String metadataFile,
+        TranslogTransferManager translogTransferManager,
+        Map<String, Tuple<Long, Long>> oldFormatMetadataFilePrimaryTermMap
+    ) throws IOException {
+        Tuple<Long, Long> minMaxPrimaryTermFromFileName = TranslogTransferMetadata.getMinMaxPrimaryTermFromFilename(metadataFile);
+        if (minMaxPrimaryTermFromFileName != null) {
+            return minMaxPrimaryTermFromFileName;
+        } else {
+            if (oldFormatMetadataFilePrimaryTermMap.containsKey(metadataFile)) {
+                return oldFormatMetadataFilePrimaryTermMap.get(metadataFile);
+            } else {
+                TranslogTransferMetadata metadata = translogTransferManager.readMetadata(metadataFile);
+                long maxPrimaryTem = TranslogTransferMetadata.getPrimaryTermFromFileName(metadataFile);
+                long minPrimaryTem = -1;
+                if (metadata.getGenerationToPrimaryTermMapper() != null
+                    && metadata.getGenerationToPrimaryTermMapper().values().isEmpty() == false) {
+                    Optional<Long> primaryTerm = metadata.getGenerationToPrimaryTermMapper()
+                        .values()
+                        .stream()
+                        .map(s -> Long.parseLong(s))
+                        .min(Long::compareTo);
+                    if (primaryTerm.isPresent()) {
+                        minPrimaryTem = primaryTerm.get();
+                    }
+                }
+                Tuple<Long, Long> minMaxPrimaryTermTuple = new Tuple<>(minPrimaryTem, maxPrimaryTem);
+                oldFormatMetadataFilePrimaryTermMap.put(metadataFile, minMaxPrimaryTermTuple);
+                return minMaxPrimaryTermTuple;
             }
-            Optional<Long> minPrimaryTerm = metadataFiles.stream()
-                .map(file -> RemoteStoreUtils.invertLong(file.split(METADATA_SEPARATOR)[1]))
-                .min(Long::compareTo);
-            // First we delete all stale primary terms folders from remote store
-            long minimumReferencedPrimaryTerm = minPrimaryTerm.get() - 1;
-            translogTransferManager.deletePrimaryTermsAsync(minimumReferencedPrimaryTerm);
         }
     }
+
+    public static void cleanup(TranslogTransferManager translogTransferManager) throws IOException {
+        ActionListener<List<BlobMetadata>> listMetadataFilesListener = new ActionListener<>() {
+            @Override
+            public void onResponse(List<BlobMetadata> blobMetadata) {
+                List<String> metadataFiles = blobMetadata.stream().map(BlobMetadata::name).collect(Collectors.toList());
+
+                try {
+                    if (metadataFiles.isEmpty()) {
+                        staticLogger.debug("No stale translog metadata files found");
+                        return;
+                    }
+                    List<String> metadataFilesToBeDeleted = getMetadataFilesToBeDeleted(metadataFiles, new HashMap<>(), staticLogger);
+                    if (metadataFilesToBeDeleted.isEmpty()) {
+                        staticLogger.debug("No metadata files to delete");
+                        return;
+                    }
+                    staticLogger.debug(() -> "metadataFilesToBeDeleted = " + metadataFilesToBeDeleted);
+
+                    // For all the files that we are keeping, fetch min and max generations
+                    List<String> metadataFilesNotToBeDeleted = new ArrayList<>(metadataFiles);
+                    metadataFilesNotToBeDeleted.removeAll(metadataFilesToBeDeleted);
+                    staticLogger.debug(() -> "metadataFilesNotToBeDeleted = " + metadataFilesNotToBeDeleted);
+
+                    // Delete stale metadata files
+                    translogTransferManager.deleteMetadataFilesAsync(metadataFilesToBeDeleted, () -> {});
+
+                    // Delete stale primary terms
+                    deleteStaleRemotePrimaryTerms(
+                        metadataFilesNotToBeDeleted,
+                        translogTransferManager,
+                        new HashMap<>(),
+                        new AtomicLong(Long.MAX_VALUE),
+                        staticLogger
+                    );
+                } catch (Exception e) {
+                    staticLogger.error("Exception while cleaning up metadata and primary terms", e);
+                }
+            }
+
+            @Override
+            public void onFailure(Exception e) {
+                staticLogger.error("Exception while cleaning up metadata and primary terms", e);
+            }
+        };
+        translogTransferManager.listTranslogMetadataFilesAsync(listMetadataFilesListener);
+    }
 }

server/src/main/java/org/opensearch/index/translog/transfer/TranslogTransferManager.java

@@ -544,6 +544,14 @@ public void onFailure(Exception e) {
         });
     }
 
+    public Set<Long> listPrimaryTermsInRemote() throws IOException {
+        Set<String> primaryTermsStr = transferService.listFolders(remoteDataTransferPath);
+        if (primaryTermsStr != null) {
+            return primaryTermsStr.stream().map(Long::parseLong).collect(Collectors.toSet());
+        }
+        return new HashSet<>();
+    }
+
     /**
      * Handles deletion of all translog files associated with a primary term.
      *

server/src/main/java/org/opensearch/index/translog/transfer/TranslogTransferMetadata.java

@@ -19,6 +19,7 @@
 import java.util.Arrays;
 import java.util.Map;
 import java.util.Objects;
+import java.util.Optional;
 
 /**
  * The metadata associated with every transfer {@link TransferSnapshot}. The metadata is uploaded at the end of the
@@ -108,11 +109,28 @@ public String getFileName() {
                 RemoteStoreUtils.invertLong(createdAt),
                 String.valueOf(Objects.hash(nodeId)),
                 RemoteStoreUtils.invertLong(minTranslogGeneration),
+                String.valueOf(getMinPrimaryTermReferred()),
                 String.valueOf(CURRENT_VERSION)
             )
         );
     }
 
+    private long getMinPrimaryTermReferred() {
+        if (generationToPrimaryTermMapper.get() == null || generationToPrimaryTermMapper.get().values().isEmpty()) {
+            return -1;
+        }
+        Optional<Long> minPrimaryTerm = generationToPrimaryTermMapper.get()
+            .values()
+            .stream()
+            .map(s -> Long.parseLong(s))
+            .min(Long::compareTo);
+        if (minPrimaryTerm.isPresent()) {
+            return minPrimaryTerm.get();
+        } else {
+            return -1;
+        }
+    }
+
     public static Tuple<Tuple<Long, Long>, String> getNodeIdByPrimaryTermAndGeneration(String filename) {
         String[] tokens = filename.split(METADATA_SEPARATOR);
         if (tokens.length < 6) {
@@ -143,15 +161,43 @@ public static Tuple<Long, Long> getMinMaxTranslogGenerationFromFilename(String f
         assert Version.CURRENT.onOrAfter(Version.V_2_17_0);
         try {
             // instead of direct index, we go backwards to avoid running into same separator in nodeId
-            String minGeneration = tokens[tokens.length - 2];
+            String minGeneration = tokens[tokens.length - 3];
             String maxGeneration = tokens[2];
             return new Tuple<>(RemoteStoreUtils.invertLong(minGeneration), RemoteStoreUtils.invertLong(maxGeneration));
-        } catch (NumberFormatException e) {
+        } catch (Exception e) {
             logger.error(() -> new ParameterizedMessage("Exception while getting min and max translog generation from: {}", filename), e);
             return null;
         }
     }
 
+    public static Tuple<Long, Long> getMinMaxPrimaryTermFromFilename(String filename) {
+        String[] tokens = filename.split(METADATA_SEPARATOR);
+        if (tokens.length < 7) {
+            // For versions < 2.17, we don't have min primary term.
+            return null;
+        }
+        assert Version.CURRENT.onOrAfter(Version.V_2_17_0);
+        try {
+            // instead of direct index, we go backwards to avoid running into same separator in nodeId
+            String minPrimaryTerm = tokens[tokens.length - 2];
+            String maxPrimaryTerm = tokens[1];
+            return new Tuple<>(Long.parseLong(minPrimaryTerm), RemoteStoreUtils.invertLong(maxPrimaryTerm));
+        } catch (Exception e) {
+            logger.error(() -> new ParameterizedMessage("Exception while getting min and max primary term from: {}", filename), e);
+            return null;
+        }
+    }
+
+    public static long getPrimaryTermFromFileName(String filename) {
+        String[] tokens = filename.split(METADATA_SEPARATOR);
+        try {
+            return RemoteStoreUtils.invertLong(tokens[1]);
+        } catch (Exception e) {
+            logger.error(() -> new ParameterizedMessage("Exception while getting max primary term from: {}", filename), e);
+            return -1;
+        }
+    }
+
     @Override
     public int hashCode() {
         return Objects.hash(primaryTerm, generation);