Modify configure script to handle API distribution.

[aymanhab]

Fixes issue #0

Brief summary of changes

This PR is supposed to generate the correct configure script to decide if API or GUI distribution and either way sets the required paths in Matlab.

Testing I've completed

Looking for feedback on...

CHANGELOG.md (choose one)

• no need to update because...
• updated.

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This change is 

[aymanhab]

@mattpetrucci Thanks for the reminder. Once the build completes I'll test the resulting script of the artifact on windows and will tag you to test in Mac environment. There will be both Arm64 and X86 artifacts on osx.

[aymanhab]

@mattpetrucci The configure script here should handle API distribution. Please let me know if you run into problem using it. Thank you.

[mattpetrucci]

@aymanhab Looks like it configured, but when I restart and tested with model = org.opensim.modeling.Model() I get errors for the dynamic libraries (see attached images). I'm on MacOS Sequoia now, and things have been more locked down in terms of permissions. This was with the CI artifact from 11-25. You had shared 11-05 originally in this thread, but I assume they have the same configure script?

@nickbianco tagging you to loop you in to where I've left off.

[nickbianco]

@mattpetrucci you might be able to manually remove the quarantine status of downloaded files on Mac using xattr -d com.apple.quarantine my_file. I haven't tried this on Sequoia yet though. You could it for just that first file, i.e., xattr -d com.apple.quarantine libosimJavaJNI.dylib and see if that works (you'll probably get a pop up for another file, but that's expected since you will have only stripped the quarantine attribute from the first file).

[mattpetrucci]

Thanks @nickbianco, that worked to get past the first but as you said, the others start popping up. Can I xattr a whole directory?

[nickbianco]

You might be able to add the flag -r to dequarantine a directory:

xattr -dr com.apple.quarantine ~/my_dir

[mattpetrucci]

Awesome, that worked. I just de-quarantined the whole artifact folder. No errors.

[aymanhab]

Sounds great @mattpetrucci and thanks for the pointer @nickbianco

Any reason not to merge then?

[mattpetrucci]

Maybe we merge and just update the documentation (if needed) to do the de-quarantine?

[nickbianco]