chore: pre-commit auto fixes [...]

src/gentropy/common/spark_helpers.py

@@ -4,9 +4,10 @@
 
 import re
 import sys
+from collections.abc import Iterable
 from functools import reduce, wraps
 from itertools import chain
-from typing import TYPE_CHECKING, Any, Callable, Iterable, Optional, TypeVar
+from typing import TYPE_CHECKING, Any, Callable, Optional, TypeVar
 
 import pyspark.sql.functions as f
 import pyspark.sql.types as t

src/gentropy/method/l2g/feature_factory.py

@@ -3,7 +3,8 @@
 
 from __future__ import annotations
 
-from typing import Any, Iterator, Mapping
+from typing import Any
+from collections.abc import Iterator, Mapping
 
 from gentropy.dataset.l2g_features.colocalisation import (
     EQtlColocClppMaximumFeature,

tests/gentropy/test_cli.py

@@ -14,15 +14,19 @@ def test_main_no_step() -> None:
     override_key = "step"
     expected = f"You must specify '{override_key}', e.g, {override_key}=<OPTION>\nAvailable options:"
 
-    with patch("sys.argv", ["cli.py"]), pytest.raises(
-        ConfigCompositionException, match=expected
+    with (
+        patch("sys.argv", ["cli.py"]),
+        pytest.raises(ConfigCompositionException, match=expected),
     ):
         main()
 
 
 def test_main_step() -> None:
     """Test the main function of the CLI complains about mandatory values."""
-    with patch("sys.argv", ["cli.py", "step=gene_index"]), pytest.raises(
-        MissingMandatoryValue, match="Missing mandatory value: step.target_path"
+    with (
+        patch("sys.argv", ["cli.py", "step=gene_index"]),
+        pytest.raises(
+            MissingMandatoryValue, match="Missing mandatory value: step.target_path"
+        ),
     ):
         main()