fix(susie_finemapper): correct syntax for saving the logs df (#625)

* fix(susie_finemapper): correct syntax for saving the logs df * fix(susie_finemapper): use parquet instead of csv --------- Co-authored-by: Yakov <yt4@sanger.ac.uk>
opentargets · May 29, 2024 · 8ae94ea · 8ae94ea
1 parent f0960b1
commit 8ae94ea
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/src/gentropy/susie_finemapper.py b/src/gentropy/susie_finemapper.py
@@ -125,8 +125,10 @@ def __init__(
                 output_path + "/" + study_locus_to_finemap
             )
             # Write log
-            result_logging["log"].df.write.mode(session.write_mode).parquet(
-                output_path_log + "/" + study_locus_to_finemap
+            result_logging["log"].to_parquet(
+                output_path_log + "/" + study_locus_to_finemap + ".parquet",
+                engine="pyarrow",
+                index=False
             )
         else:
             result = self.susie_finemapper_ss_gathered(