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fix(vep_operator): change dtype for pos to int for correct sorting #38

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merged 1 commit into from
Oct 11, 2024

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Rationale

This PR fixes isssue issue with vep variant annotation operator spotted on batch job, that caused the partitionned vcf files were not sorted correctly before annotating them by vep.

See the exact errors of failed jobs in logs

Fixes

This PR changes the POS field in partitionned vcfs to int so the partitionning is done correctly.

@project-defiant project-defiant marked this pull request as ready for review October 11, 2024 14:21
@d0choa d0choa merged commit d343042 into dev Oct 11, 2024
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@d0choa d0choa deleted the vep-sorting-fix branch October 11, 2024 14:25
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