setup.py

# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

from __future__ import print_function
import os
import re

# TODO: replace setup.py with pyproject.toml
from setuptools import setup

package_name = "pyensembl"
current_directory = os.path.dirname(__file__)
readme_filename = "README.md"
readme_path = os.path.join(current_directory, readme_filename)
github_url = "https://github.com/openvax/%s" % package_name

try:
    with open(readme_path, "r") as f:
        readme_markdown = f.read()
except IOError as e:
    print(e)
    print("Failed to open %s" % readme_path)
    readme_markdown = ""


with open("%s/version.py" % package_name, "r") as f:
    version = re.search(
        r'^__version__\s*=\s*[\'"]([^\'"]*)[\'"]', f.read(), re.MULTILINE
    ).group(1)

if not version:
    raise RuntimeError("Cannot find version information")

if __name__ == "__main__":
    with open("requirements.txt") as f:
        requirements = [l.strip() for l in f]

    setup(
        name=package_name,
        version=version,
        description="Python interface to Ensembl reference genome metadata",
        author="Alex Rubinsteyn",
        author_email="alex.rubinsteyn@unc.edu",
        url=github_url,
        license="http://www.apache.org/licenses/LICENSE-2.0.html",
        entry_points={
            "console_scripts": ["pyensembl = %s.shell:run" % package_name],
        },
        classifiers=[
            "Development Status :: 4 - Beta",
            "Environment :: Console",
            "Operating System :: OS Independent",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: Apache Software License",
            "Programming Language :: Python",
            "Topic :: Scientific/Engineering :: Bio-Informatics",
        ],
        install_requires=requirements,
        long_description=readme_markdown,
        long_description_content_type="text/markdown",
        packages=[package_name],
        package_data={
            package_name: ["logging.conf", "../requirements.txt"],
        },
    )