Skip to content

Issues: openvax/pyensembl

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

69 Open 105 Closed
69 Open 105 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Retrieving unspliced sequence
#313 opened Nov 25, 2024 by austinv11
Bump genome version to 112
#311 opened Oct 2, 2024 by allumik
'numpy' has no attribute 'typeDict'
#310 opened Sep 6, 2024 by nick-youngblut
8
How to convert the name such as '128843_chr7_5473to5474_10k' to gene symbol?
#308 opened Aug 16, 2024 by Sarah-air
[Housekeeping] Explicitly typing all files!
#303 opened Feb 19, 2024 by akmazian
2
[new feature] Support more ensembl genome, such as plants and fungi
#298 opened Jan 10, 2024 by y9c
3
transcript_support_level attr would cause error when containing space.
#297 opened Jan 2, 2024 by y9c
1
Similar to the list subcommand, a subcommand to list all available release to download is necessary.
#296 opened Dec 29, 2023 by y9c
Update tags
#288 opened Aug 15, 2023 by linqigang888
7
protein_ids_at_locus() gives incorrect results
#286 opened May 8, 2023 by aeschriefer
1
bash: pyensembl: command not found
#285 opened Feb 28, 2023 by JunxiFeng
1
is it possible to find the nearest feature when there is none at the locus
#283 opened Feb 18, 2023 by Cloufield
distance_to_locus is inf for loci on opposite strands, feature or a bug?
#280 opened Feb 15, 2023 by rraadd88
2
gene class should have a method to get its sequence
#270 opened Oct 6, 2022 by antonkulaga
@rraadd88
4
Cannot update Ensembl release
#269 opened Aug 24, 2022 by DDudka9
6
Cannot Access the coding sequence in specific transcript
#267 opened Aug 4, 2022 by HealHer
[How to use with custom data] NCBI human gene model
#265 opened Jun 3, 2022 by damianosmel
1
pip install in conda does not allow for download
#264 opened Apr 20, 2022 by da-i
1
A method for getting length of the overlap between two loci
#260 opened Nov 21, 2021 by integratebio
[Software package citation]
#259 opened Nov 17, 2021 by damianosmel
Genbank file with feature output for gene?
#258 opened Nov 14, 2021 by harijay
"genome" was provided but still raise an error
#254 opened May 23, 2021 by limin321
.complete method of Transcript class return a wrong result for some transcript ids.
#252 opened May 17, 2021 by y9c
How to run pyensembl using multiple threads?
#251 opened May 6, 2021 by damianosmel
1
How to select mouse database?
#250 opened Apr 19, 2021 by zhoutianrui-tongji
1
ProTip! Adding no:label will show everything without a label.