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| Original file line number | Diff line number | Diff line change |
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| library(FactoMineR) | ||
| library(Factoshiny) | ||
| # factorialPlanWfs<-function(intersec_sf, sfWfs = NULL){ | ||
| # columnNames<-names(intersec_sf) | ||
| # LCZwfsNames<-grep( pattern = "LCZ*", x = names(intersec_sf), value = TRUE) | ||
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| # } | ||
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| test_sf_for_MCA<-st_drop_geometry(multicompare_test[ | ||
| , grep( pattern = "LCZ*", x = names(multicompare_test), value = ) ]) | ||
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| test.MCA<-FactoMineR::MCA(X = test_sf_for_MCA, ncp = 4913) | ||
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| Factoshiny::MCAshiny(test.MCA) |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,48 @@ | ||
| agreementByLCZlevel <- function(intersec_sf, sfWfs = NULL){ | ||
| if ( !is.null(intersec_sf$geometry)) { | ||
| intersec_sf<-st_drop_geometry(intersec_sf) | ||
| } | ||
| columnNames<-names(intersec_sf) | ||
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| LCZwfsNames<-grep( pattern = "LCZ*", x = names(intersec_sf), value = TRUE) | ||
| intersec_sf$LCZmode<-apply(intersec_sf[,LCZwfsNames], 1, Mode) | ||
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| agreementByModeLCZ<- intersec_sf %>% group_by(LCZmode, maxAgree) %>% summarize(agreeByLCZsurf = sum(drop_units(area))) %>% mutate(LCZmode = as.integer(LCZmode), agreeByLCZPerc = round( agreeByLCZsurf/sum(agreeByLCZsurf)*100, digits = 2)) | ||
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| # areaByAgreement <- intersec_sf %>% group_by(maxAgree) %>% summarize ( areaByAgree = sum(drop_units(area))) %>% mutate ( agreementSurfPerc = round(areaByAgree / sum(areaByAgree) * 100, digits = 3)) | ||
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| generalProp<-intersec_sf %>% select(area, LCZmode) %>% mutate(totalArea=sum(drop_units(area))) %>% | ||
| group_by(LCZmode) %>% | ||
| summarize(modeLCZGenSurfPerc = sum(drop_units(area)), totalArea = mean(totalArea)) %>% | ||
| mutate(modeLCZGenSurfPerc = round(modeLCZGenSurfPerc / totalArea *100 , digits = 3)) %>% | ||
| select(LCZmode, modeLCZGenSurfPerc) %>% mutate(LCZmode = as.integer(LCZmode)) | ||
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| # modeLCZSurfbyAgreement<-left_join(modeLCZSurfbyAgreement, generalProp, by = "LCZmode") %>% | ||
| # arrange(desc(maxAgree),desc(modeLCZSurfPerc)) | ||
| # modeLCZSurfbyAgreement<-left_join(modeLCZSurfbyAgreement, areaByAgreement, by = "maxAgree") | ||
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| agreementByModeLCZ <- agreementByModeLCZ %>% | ||
| dplyr::arrange(LCZmode,desc(maxAgree)) %>% select(LCZmode, maxAgree, agreeByLCZPerc) | ||
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| agreementByModeLCZ <- left_join(agreementByModeLCZ, generalProp, by = "LCZmode") | ||
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| p<-ggplot(agreementByModeLCZ, aes(x = maxAgree, y = agreeByLCZPerc)) + | ||
| geom_bar(stat = "identity") + | ||
| facet_wrap(~ LCZmode) | ||
| print(p) | ||
| return(agreementByModeLCZ) | ||
| } | ||
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| Mode <- function(x) { | ||
| ux <- unique(x) | ||
| unlist(ux[which.max(tabulate(match(x, ux)))]) | ||
| } | ||
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| library(units) | ||
| library(dplyr) | ||
| library(sf) | ||
| library(ggplot2) | ||
| library(lczexplore) | ||
| agreeByLCZmodeTest <- agreementByLCZlevel(multicompare_test$intersec_sf) | ||
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| head(agreeByLCZmodeTest) |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,18 @@ | ||
| computeAgreements<-function(intersec_sf, nbWfs) { | ||
| intersec_sfnogeom<-st_drop_geometry(intersec_sf) | ||
| for (i in 1:(nbWfs - 1)) { | ||
| for(j in (i+1):nbWfs){ | ||
| compName<-paste0(i,"_",j) | ||
| print(compName) | ||
| intersec_sfnogeom[,compName]<-intersec_sfnogeom[,i] == intersec_sfnogeom[,j] | ||
| } | ||
| } # TODO : refactor with a matrix reduction operation | ||
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| rangeCol<-( (nbWfs+2):ncol(intersec_sfnogeom) ) # nbWfs+2 because of the area column | ||
| print(names(intersec_sfnogeom)[rangeCol]) | ||
| # print(names(intersec_sfnogeom[,rangeCol])) | ||
| intersec_sfnogeom$nbAgree<-apply(intersec_sfnogeom[,rangeCol],MARGIN=1,sum) | ||
| intersec_sfnogeom$maxAgree<-apply( | ||
| X = intersec_sfnogeom[,1:nbWfs], MARGIN = 1, function(x) max(table(x) )) | ||
| intersec_sf<-cbind(intersec_sfnogeom,intersec_sf$geometry) %>% st_as_sf() | ||
| } |
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