Repositories list

• upptime

  Public
  Site monitoring

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

• BIA-astro

  Public
  Astro

  •1•0•0•3•Updated Mar 3, 2025Mar 3, 2025

• bia-training

  Public
  BIA training materials

  Jupyter Notebook

  •

  Other

  •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

• BIA-ro-crate

  Public
  A CLI tool to convert between BioImage Archive API objects and RO-crate (specifically include those used in the ome-zarr v4 stastandard).

  0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• bia-integrator

  Public
  Python

  •

  Apache License 2.0

  •3•2•32•8•Updated Feb 26, 2025Feb 26, 2025

• emfir

  Public
  EMPIAR fast image reader

  Rust

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• bia-treebrowse

  Public
  Tree browser widget for file display

  TypeScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• bia-study-stats

  Public
  Python

  •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• empiar-study-stats

  Public
  0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

• bia-bmz-integration

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•2•Updated Feb 18, 2025Feb 18, 2025

• bia-zarr

  Public
  Minimal BIA OME-Zarr tools

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 16, 2025Feb 16, 2025

• imc-ome-zarr

  Public
  Simple tools for working with IMC data with OME-Zarr

  Python

  •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• bia-converter

  Public
  Python

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• DToL-processing

  Public
  Code to process DToL-like data using BioSamples

  Jupyter Notebook

  •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

• ebi-ngff-challenge-samples

  Public
  EBI imaging samples for 2024 OME NGFF challenge

  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• bia-binder

  Public
  Continuous deployment for binderhub at the BioImageArchive

  HTML

  •

  MIT License

  •1•4•13•0•Updated Sep 3, 2024Sep 3, 2024

• ome2024-ngff-challenge

  Public
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

  Python

  •14•0•0•0•Updated Aug 8, 2024Aug 8, 2024

• bia-converter-deprecated

  Public
  BioImage Archive conversion pipelining software

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Jul 4, 2024Jul 4, 2024

• ebi_summer_school

  Public
  0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• bia-explorer

  Public
  Python package for exploring BIA data

  Jupyter Notebook

  •

  Apache License 2.0

  •1•2•3•1•Updated Jun 13, 2024Jun 13, 2024

• pytorch_tutorial

  Public
  pyTorch demo(s)

  Jupyter Notebook

  •2•6•0•0•Updated Jun 11, 2024Jun 11, 2024

• ai_data

  Public
  Python

  •0•0•0•0•Updated May 18, 2024May 18, 2024

• bia-exporter

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated May 17, 2024May 17, 2024

• bia-agent

  Public
  BioImage Archive local submission assistant

  Python

  •

  Apache License 2.0

  •2•2•1•0•Updated May 15, 2024May 15, 2024

• bia-mifa-models

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•1•1•0•Updated Feb 14, 2024Feb 14, 2024

• bia-integrator-data

  Public
  BIA integrator data files

  0•0•0•0•Updated Jan 24, 2024Jan 24, 2024

• bia-images-masks-to-omezarr

  Public
  Code for converting images and segmentation masks to OME-Zarr

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated Aug 15, 2023Aug 15, 2023

• ai_training_course

  Public
  Jupyter Notebook

  •1•8•0•0•Updated May 26, 2023May 26, 2023

• bia-rembi-models

  Public
  Python

  •

  Apache License 2.0

  •1•0•1•1•Updated Apr 4, 2023Apr 4, 2023

• bia-integrator-tools

  Public archive
  Tools (including CLI) for working with bia-integrator

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 16, 2023Mar 16, 2023