Repositories list

• status.bioconductor.org

  Public
  Status page for Bioconductor based on cstate hugo site

  0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• BiocStickers

  Public
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.

  bioconductorstickers

  R

  •

  Other

  •87•123•7•1•Updated Nov 22, 2024Nov 22, 2024

• BiocSlack

  Public
  CSS

  •

  MIT License

  •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

• txdbmaker

  Public
  A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)

  bioconductor-packagecore-package

  R

  •1•2•5•0•Updated Nov 21, 2024Nov 21, 2024

• EuroBioC2025

  Public
  Website of the European Bioconductor Conference 2025

  CSS

  •3•2•1•0•Updated Nov 21, 2024Nov 21, 2024

• BiocIO

  Public
  Standard input / output framework for use by Bioconductor packages

  bioconductor-packagecore-package

  R

  •0•1•1•0•Updated Nov 21, 2024Nov 21, 2024

• biocblog

  Public
  A Quarto blog for Bioconductor community

  blogcommunityr+ 4bioconductorhacktoberfestquartohacktoberfest2022

  HTML

  •26•9•6•1•Updated Nov 21, 2024Nov 21, 2024

• BiocClassesWorkingGroup

  Public
  Notes and Discussion concerning recommended classes for Bioconductor

  0•2•11•0•Updated Nov 21, 2024Nov 21, 2024

• BBS

  Public
  The Bioconductor Build System

  Shell

  •11•9•48•2•Updated Nov 20, 2024Nov 20, 2024

• bio-web-stats

  Public
  Code base for replacement of stats.bioconductor.org (download_stats)

  Python

  •0•1•3•0•Updated Nov 20, 2024Nov 20, 2024

• BiocWorkingGroups

  Public
  Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

  communitybookworking-group+ 2bioconductorguidelines

  TeX

  •12•8•0•0•Updated Nov 20, 2024Nov 20, 2024

• pkgrevdocs

  Public
  Training Material for Community Reviewers

  TeX

  •

  Other

  •18•8•10•1•Updated Nov 20, 2024Nov 20, 2024

• bioconductor.org

  Public
  Source code for the Bioconductor website

  websitebioconductor

  HTML

  •40•24•13•11•Updated Nov 19, 2024Nov 19, 2024

• biocViews

  Public
  Categorized views of R package repositories

  bioconductor-packagecore-package

  R

  •4•4•3•3•Updated Nov 19, 2024Nov 19, 2024

• code.bioconductor.org

  Public
  Tools for browsing and searching the code behind Bioconductor packages

  code-searchbioconductorr-packages

  CSS

  •

  MIT License

  •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Shell

  •

  Artistic License 2.0

  •31•73•15•5•Updated Nov 15, 2024Nov 15, 2024

• GenomicRanges

  Public
  Representation and manipulation of genomic intervals

  bioconductor-packagecore-package

  R

  •18•45•23•4•Updated Nov 15, 2024Nov 15, 2024

• GenomeInfoDb

  Public
  Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

  bioconductor-packagecore-package

  R

  •13•31•7•0•Updated Nov 15, 2024Nov 15, 2024

• IRanges

  Public
  Foundation of integer range manipulation in Bioconductor

  bioconductor-packagecore-package

  R

  •10•22•9•3•Updated Nov 15, 2024Nov 15, 2024

• S4Vectors

  Public
  Foundation of vector-like and list-like containers in Bioconductor

  bioconductor-packagecore-package

  R

  •20•18•24•1•Updated Nov 15, 2024Nov 15, 2024

• auto-archive-release

  Public
  Ansible playbook to archive a release using rsync and rclone via a VM

  Jinja

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• DelayedArray

  Public
  A unified framework for working transparently with on-disk and in-memory array-like datasets

  bioconductor-packagecore-package

  R

  •9•25•19•0•Updated Nov 14, 2024Nov 14, 2024

• BiocGenerics

  Public
  Defines many S4 generic functions used in Bioconductor

  bioconductor-packagecore-package

  R

  •7•12•0•0•Updated Nov 14, 2024Nov 14, 2024

• SparseArray

  Public
  High-performance sparse data representation and manipulation in R

  bioconductor-packagecore-package

  C

  •2•8•3•0•Updated Nov 14, 2024Nov 14, 2024

• AnVIL

  Public
  Interact with AnVIL and Leonardo projects

  R

  •10•8•11•0•Updated Nov 13, 2024Nov 13, 2024

• bioconductor-training

  Public
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •22•41•9•0•Updated Nov 13, 2024Nov 13, 2024

• BioconductorAnnotationPipeline

  Public
  build and push Bioconductor annotation packages

  R

  •6•4•0•0•Updated Nov 12, 2024Nov 12, 2024

• spb_history

  Public
  Python

  •1•0•1•0•Updated Nov 12, 2024Nov 12, 2024

• packagebuilder

  Public
  JavaScript

  •7•5•1•0•Updated Nov 12, 2024Nov 12, 2024

• bioc-common-python

  Public
  Python

  •2•1•0•0•Updated Nov 12, 2024Nov 12, 2024