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    9 repositories

    • WolbachiaSubmission

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • MarkerScan

      Public
      This repository contains a Snakemake pipeline which determines the species composition of the sample by SSU presence and separates them accordingly.
      Python
      •
      MIT License
      •1•5•1•0•Updated Feb 6, 2025Feb 6, 2025

    • Kudoa_genomes

      Public
      Data associated with "Kudoa genomes from contaminated hosts reveal extensive gene order conservation and rapid sequence evolution"
      0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • HiC_network

      Public
      Group and visualise networks of interacting sequences using chromatin contacts and graph embeddings
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • CobiontID.github.io

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Nov 4, 2024Nov 4, 2024

    • read_VAE

      Public
      VAE-based framework to explore long-read datasets and identify potential contaminants or cobionts
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • unique-kmer-counts

      Public
      Count the number of distinct k-mers in a sequence
      bioinformaticsgenomics
      Rust
      •
      MIT License
      •0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • kmer-counter

      Public
      A fast k-mer counter written in Rust
      bioinformaticsgenomics
      Rust
      •
      MIT License
      •0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • fastk-medians

      Public
      Calculate median number of times each k-mer in a sequence occurs across a set
      bioinformatics
      C
      •17•0•0•0•Updated Feb 7, 2023Feb 7, 2023