Fortran77 compiler missing? #4411

Matteo-Malve · 2023-04-12T09:25:45Z

Matteo-Malve
Apr 12, 2023

Output of `brew config`

HOMEBREW_VERSION: 4.0.12
ORIGIN: https://github.com/Homebrew/brew
HEAD: 0a23ee246667abe6ac763b4c67022fb6a5e5f562
Last commit: 2 days ago
Core tap origin: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 622bd1a9f7fc4e06c6cdcafb02a76919425b6996
Core tap last commit: 23 hours ago
Core tap branch: master
Core tap JSON: 11 Apr 17:27 UTC
HOMEBREW_PREFIX: /opt/homebrew
HOMEBREW_CASK_OPTS: []
HOMEBREW_DISPLAY: /private/tmp/com.apple.launchd.93cETdBjy1/org.xquartz:0
HOMEBREW_MAKE_JOBS: 8
Homebrew Ruby: 2.6.10 => /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/bin/ruby
CPU: octa-core 64-bit arm_firestorm_icestorm
Clang: 14.0.3 build 1403
Git: 2.39.2 => /Applications/Xcode.app/Contents/Developer/usr/bin/git
Curl: 7.87.0 => /usr/bin/curl
macOS: 13.3-arm64
CLT: 14.3.0.0.1.1679647830
Xcode: 14.3
Rosetta 2: false

Output of `brew doctor`

Your system is ready to brew.

Description of issue

Hi, I work on a Macbook with M1 processor and MacOs Ventura.
During multiple installations from source I experience this issue, the system can't find fortran compiler, although I have installed (and reinstalled to be sure) gcc gcc@11 open-mpi with brew.
In fact if I run brew list this is what I get:

==> Formulae
ca-certificates	gcc		gmp		isl		libmpc		mpfr		openssl@1.1	yarn
cmake		gcc@11		hwloc		libevent	lz4		open-mpi	xz		zstd

1st occurrence of the error:

I was installing trilinos library from source. Since I'm not an expert I'll leave here what I've done:

# I cloned the git repo
mkdir build
cd build
cmake \
-DTPL_ENABLE_MPI=ON \
-DTrilinos_ENABLE_ALL_PACKAGES=ON \
-DCMAKE_INSTALL_PREFIX=/Users/******/my_libraries/trilinos \
..

I got the error before it finished to create the makefile. It's the following:

Probing the environment ...

-- USE_XSDK_DEFAULTS='FALSE'
-- BUILD_SHARED_LIBS='FALSE'
-- Setting CMAKE_BUILD_TYPE=RELEASE since it was not set ...
-- CMAKE_BUILD_TYPE='RELEASE'
-- MPI_USE_COMPILER_WRAPPERS='ON'
-- MPI_C_COMPILER='/opt/homebrew/bin/mpicc'
-- Setting CMAKE_C_COMPILER=${MPI_C_COMPILER}
-- CMAKE_C_COMPILER='/opt/homebrew/bin/mpicc'
-- MPI_CXX_COMPILER='/opt/homebrew/bin/mpicxx'
-- Setting CMAKE_CXX_COMPILER=${MPI_CXX_COMPILER}
-- CMAKE_CXX_COMPILER='/opt/homebrew/bin/mpicxx'
-- MPI_Fortran_COMPILER='/opt/homebrew/bin/mpif90'
-- Setting CMAKE_Fortran_COMPILER=${MPI_Fortran_COMPILER}
-- CMAKE_Fortran_COMPILER='/opt/homebrew/bin/mpif90'
-- MPI_EXEC='/opt/homebrew/bin/mpiexec'
-- The C compiler identification is AppleClang 14.0.3.14030022
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/homebrew/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- CMAKE_C_COMPILER_ID='AppleClang'
-- CMAKE_C_COMPILER_VERSION='14.0.3.14030022'
-- The CXX compiler identification is AppleClang 14.0.3.14030022
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/homebrew/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- CMAKE_CXX_COMPILER_ID='AppleClang'
-- CMAKE_CXX_COMPILER_VERSION='14.0.3.14030022'
-- The Fortran compiler identification is GNU 12.2.0
-- Checking whether Fortran compiler has -isysroot
-- Checking whether Fortran compiler has -isysroot - yes
-- Checking whether Fortran compiler supports OSX deployment target flag
-- Checking whether Fortran compiler supports OSX deployment target flag - yes
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - failed
-- Check for working Fortran compiler: /opt/homebrew/bin/mpif90
-- Check for working Fortran compiler: /opt/homebrew/bin/mpif90 - broken
CMake Error at /opt/homebrew/Cellar/cmake/3.26.3/share/cmake/Modules/CMakeTestFortranCompiler.cmake:59 (message):
  The Fortran compiler

    "/opt/homebrew/bin/mpif90"

  is not able to compile a simple test program.

  It fails with the following output:

    Change Dir: /Users/******/Trilinos/build/CMakeFiles/CMakeScratch/TryCompile-3rNsbu
    
    Run Build Command(s):/opt/homebrew/Cellar/cmake/3.26.3/bin/cmake -E env VERBOSE=1 /usr/bin/make -f Makefile cmTC_437f8/fast && /Applications/Xcode.app/Contents/Developer/usr/bin/make  -f CMakeFiles/cmTC_437f8.dir/build.make CMakeFiles/cmTC_437f8.dir/build
    Building Fortran object CMakeFiles/cmTC_437f8.dir/testFortranCompiler.f.o
    /opt/homebrew/bin/mpif90   -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.3.sdk -c /Users/******/Trilinos/build/CMakeFiles/CMakeScratch/TryCompile-3rNsbu/testFortranCompiler.f -o CMakeFiles/cmTC_437f8.dir/testFortranCompiler.f.o
    Linking Fortran executable cmTC_437f8
    /opt/homebrew/Cellar/cmake/3.26.3/bin/cmake -E cmake_link_script CMakeFiles/cmTC_437f8.dir/link.txt --verbose=1
    /opt/homebrew/bin/mpif90  -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.3.sdk CMakeFiles/cmTC_437f8.dir/testFortranCompiler.f.o -o cmTC_437f8 
    ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.3.sdk/usr/lib/libSystem.tbd' for architecture arm64
    collect2: error: ld returned 1 exit status
    make[1]: *** [cmTC_437f8] Error 1
    make: *** [cmTC_437f8/fast] Error 2
    
    

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  cmake/tribits/core/package_arch/TribitsGlobalMacros.cmake:1588 (enable_language)
  cmake/tribits/core/package_arch/TribitsProjectImpl.cmake:183 (tribits_setup_env)
  cmake/tribits/core/package_arch/TribitsProject.cmake:92 (tribits_project_impl)
  CMakeLists.txt:126 (TRIBITS_PROJECT)

2nd occurrence of the error:

I was trying to install p4est library, through candi, it being part of a bigger library (dealii), which is the my final goal.
I was referring to the simple instructions on this page: https://github.com/dealii/dealii/wiki/Apple-ARM-M1-OSX
After launching ./candi.sh -j 8 --packages="p4est"
This is what I got:

candi tries now to download, configure, build and install:

Project:  deal.II-toolchain
Platform: deal.II-toolchain/platforms/supported/macos.platform

Fetching p4est 2.3.2
Trying to download https://tjhei.info/candi-mirror/p4est-2.3.2.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   342  100   342    0     0    433      0 --:--:-- --:--:-- --:--:--   432
  0   196    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
curl: (22) The requested URL returned error: 404
Trying to download https://cecas.clemson.edu/dealii/mirror/p4est-2.3.2.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0   196    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
curl: (22) The requested URL returned error: 404
Trying to download https://p4est.github.io/release/p4est-2.3.2.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 3884k  100 3884k    0     0  1072k      0  0:00:03  0:00:03 --:--:-- 1072k
Verifying p4est-2.3.2.tar.gz
p4est-2.3.2.tar.gz: OK(sha256)
Unpacking p4est-2.3.2.tar.gz
Building p4est 2.3.2
CFLAGS_FAST: -O2
CFLAGS_DEBUG: -O0 -g

This script tries configure and build the p4est library.
Build FAST: /Users/******/dealii-candi/tmp/build/p4est-2.3.2/FAST
Build DEBUG: /Users/******/dealii-candi/tmp/build/p4est-2.3.2/DEBUG
Install FAST: /Users/******/dealii-candi/p4est-2.3.2/FAST
Install DEBUG: /Users/******/dealii-candi/p4est-2.3.2/DEBUG
Checking environment: CFLAGS P4EST_CFLAGS_FAST P4EST_CFLAGS_DEBUG
See output in files .../config.output and .../make.output

Build FAST version in /Users/******/dealii-candi/tmp/build/p4est-2.3.2/FAST
/Users/******/dealii-candi/tmp/unpack/p4est-2.3.2/configure: line 4056: test: argument expected
configure: error: in `/Users/******/dealii-candi/tmp/build/p4est-2.3.2/FAST':
configure: error: Fortran 77 compiler cannot create executables
See `config.log' for more details
Error: Error in configure

config.log

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by p4est configure 2.3.2, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ /Users/******/dealii-candi/tmp/unpack/p4est-2.3.2/configure --enable-mpi --enable-shared --disable-vtk-binary --without-blas --prefix=/Users/******/dealii-candi/p4est-2.3.2/FAST CFLAGS=-O2 CPPFLAGS=-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL F77=mpifort

## --------- ##
## Platform. ##
## --------- ##

hostname = Air-di-Matteo.station
uname -m = arm64
uname -r = 22.4.0
uname -s = Darwin
uname -v = Darwin Kernel Version 22.4.0: Mon Mar  6 21:00:41 PST 2023; root:xnu-8796.101.5~3/RELEASE_ARM64_T8103

/usr/bin/uname -p = arm
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = Mach kernel version:
	 Darwin Kernel Version 22.4.0: Mon Mar  6 21:00:41 PST 2023; root:xnu-8796.101.5~3/RELEASE_ARM64_T8103
Kernel configured for up to 8 processors.
8 processors are physically available.
8 processors are logically available.
Processor type: arm64e (ARM64E)
Processors active: 0 1 2 3 4 5 6 7
Primary memory available: 16.00 gigabytes
Default processor set: 515 tasks, 2272 threads, 8 processors
Load average: 13.45, Mach factor: 1.72
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /Users/******/opt/anaconda3/bin
PATH: /Users/******/opt/anaconda3/condabin
PATH: /opt/homebrew/bin
PATH: /opt/homebrew/sbin
PATH: /usr/local/bin
PATH: /System/Cryptexes/App/usr/bin
PATH: /usr/bin
PATH: /bin
PATH: /usr/sbin
PATH: /sbin
PATH: /opt/X11/bin
PATH: /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin
PATH: /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin
PATH: /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:3024: checking for a BSD-compatible install
configure:3092: result: /usr/bin/install -c
configure:3103: checking whether build environment is sane
configure:3158: result: yes
configure:3309: checking for a thread-safe mkdir -p
configure:3348: result: /Users/******/dealii-candi/tmp/unpack/p4est-2.3.2/build-aux/install-sh -c -d
configure:3355: checking for gawk
configure:3385: result: no
configure:3355: checking for mawk
configure:3385: result: no
configure:3355: checking for nawk
configure:3385: result: no
configure:3355: checking for awk
configure:3371: found /usr/bin/awk
configure:3382: result: awk
configure:3393: checking whether make sets $(MAKE)
configure:3415: result: yes
configure:3444: checking whether make supports nested variables
configure:3461: result: yes
configure:3598: checking whether make supports nested variables
configure:3615: result: yes
configure:3642: checking for a sed that does not truncate output
configure:3706: result: /usr/bin/sed
configure:3725: checking Major version
configure:3727: result: 2
configure:3729: checking Minor version
configure:3731: result: 3
configure:3733: checking Point version
configure:3735: result: 2
configure:3968: checking whether we are using MPI
configure:3970: result: yes
configure:3987: checking whether we are using MPI I/O
configure:3989: result: yes
configure:4006: checking whether we are using MPI_Init_thread
configure:4008: result: yes
configure:4018: checking for mpiexec
configure:4034: found /opt/homebrew/bin/mpiexec
configure:4045: result: mpiexec
configure:4085:                             F77 set to mpifort
configure:4092:                              FC set to mpifort
configure:4098:                              CC set to mpicc
configure:4104:                             CXX set to mpicxx
configure:4357: checking for Fortran 77 compiler version
configure:4366: mpifort --version >&5
GNU Fortran (Homebrew GCC 11.3.0) 11.3.0
Copyright (C) 2021 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4377: $? = 0
configure:4366: mpifort -v >&5
Using built-in specs.
COLLECT_GCC=/opt/homebrew/bin/gfortran-11
COLLECT_LTO_WRAPPER=/opt/homebrew/Cellar/gcc@11/11.3.0/bin/../libexec/gcc/aarch64-apple-darwin22/11/lto-wrapper
Target: aarch64-apple-darwin22
Configured with: ../configure --prefix=/opt/homebrew/opt/gcc@11 --libdir=/opt/homebrew/opt/gcc@11/lib/gcc/11 --disable-nls --enable-checking=release --with-gcc-major-version-only --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-11 --with-gmp=/opt/homebrew/opt/gmp --with-mpfr=/opt/homebrew/opt/mpfr --with-mpc=/opt/homebrew/opt/libmpc --with-isl=/opt/homebrew/opt/isl --with-zstd=/opt/homebrew/opt/zstd --with-pkgversion='Homebrew GCC 11.3.0' --with-bugurl=https://github.com/Homebrew/homebrew-core/issues --build=aarch64-apple-darwin22 --with-system-zlib --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 11.3.0 (Homebrew GCC 11.3.0) 
configure:4377: $? = 0
configure:4366: mpifort -V >&5
gfortran-11: error: unrecognized command-line option '-V'
gfortran-11: fatal error: no input files
compilation terminated.
configure:4377: $? = 1
configure:4366: mpifort -qversion >&5
gfortran-11: error: unrecognized command-line option '-qversion'; did you mean '--version'?
gfortran-11: fatal error: no input files
compilation terminated.
configure:4377: $? = 1
configure:4392: checking whether the Fortran 77 compiler works
configure:4414: mpifort   conftest.f  >&5
ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/lib/libSystem.tbd' for architecture arm64
collect2: error: ld returned 1 exit status
configure:4418: $? = 1
configure:4456: result: no
configure: failed program was:
|       program main
| 
|       end
configure:4461: error: in `/Users/******/dealii-candi/tmp/build/p4est-2.3.2/FAST':
configure:4463: error: Fortran 77 compiler cannot create executables
See `config.log' for more details

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## Output variables. ##
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am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build=''
build_alias=''
build_cpu=''
build_os=''
build_vendor=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host=''
host_alias=''
host_cpu=''
host_os=''
host_vendor=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /Users/******/dealii-candi/tmp/unpack/p4est-2.3.2/build-aux/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
pkgconfigdir='${libdir}/pkgconfig'
prefix='/Users/******/dealii-candi/p4est-2.3.2/FAST'
program_transform_name='s,x,x,'
psdir='${docdir}'
runstatedir='${localstatedir}/run'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "p4est"
#define PACKAGE_TARNAME "p4est"
#define PACKAGE_VERSION "2.3.2"
#define PACKAGE_STRING "p4est 2.3.2"
#define PACKAGE_BUGREPORT "p4est@ins.uni-bonn.de"
#define PACKAGE_URL ""
#define PACKAGE "p4est"
#define VERSION "2.3.2"
#define VERSION_MAJOR 2
#define VERSION_MINOR 3
#define VERSION_POINT 2
#define VTK_COMPRESSION 1
#define ENABLE_VTK_COMPRESSION 1
#define BUILD_2D 1
#define ENABLE_BUILD_2D 1
#define BUILD_3D 1
#define ENABLE_BUILD_3D 1
#define BUILD_P6EST 1
#define ENABLE_BUILD_P6EST 1
#define MPI 1
#define ENABLE_MPI 1
#define MPIIO 1
#define ENABLE_MPIIO 1
#define ENABLE_MPITHREAD 1

configure: exit 77

Conclusions

Apart my issue in installing dealii library, which is not pertinent to this discussion, I have some evident problem with the fortran compiler.
Do you have any idea?
Some way to fix it?

carlocab · 2023-04-12T09:44:13Z

carlocab
Apr 12, 2023

Does it work if you set F77 and FC to gfortran-11?

1 reply

Matteo-Malve Apr 12, 2023
Author

I've just tried to run

export F77=gfortran-11
export FC=gfortran-11

cmake \                
-DTPL_ENABLE_MPI=ON \
-DTrilinos_ENABLE_ALL_PACKAGES=ON \
-DCMAKE_INSTALL_PREFIX=/Users/matteom/my_libraries/trilinos \
..

of occurrence 1) but I got the same error and output as before.

Did you mean this right? Otherwise I'm hears up.
Sorry but I'm a beginner.
And thanks

cho-m · 2023-04-13T08:59:41Z

cho-m
Apr 13, 2023

Main error may mean mismatch between linker and SDK in your environment:

ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/lib/libSystem.tbd' for architecture arm64

You can try checking which ld in case it is using something other than system linker.

Some other things:

Are you potentially mixing Anaconda environment? That can cause conflicts if it introduces incompatibilities.
```
PATH: /Users/******/opt/anaconda3/bin
PATH: /Users/******/opt/anaconda3/condabin
PATH: /opt/homebrew/bin
```
Is there a reason you are trying to use open-mpi with GCC 11?
```
configure:4366: mpifort --version >&5
GNU Fortran (Homebrew GCC 11.3.0) 11.3.0
```
open-mpi is currently built with GCC 12 (gcc) in Homebrew, so would be good to try with default to remove this as potential issue.

And some further things if above hasn't helped:

Make sure everything is up-to-date and maybe try removing any extra environment settings (e.g. PATH modifications, environment variables) beyond bare minimum.
Then, just compile a sample fortran program to simplify the debugging process.

0 replies

camilleebernard · 2024-02-08T12:26:19Z

camilleebernard
Feb 8, 2024

Hi Matteo
I'm trying to install candi and ASPECT and I have exactly the same error. Have you managed to solve the problem ?
Thanks,
Camille

0 replies

Matteo-Malve · 2024-02-08T15:00:36Z

Matteo-Malve
Feb 8, 2024
Author

I’m sorry, I turned to macports and I didn’t try any longer. Best, Matteo Am 08.02.2024 um 13:26 schrieb Camille Bernard ***@***.***>: Hi Matteo I'm trying to install candi and ASPECT and I have exactly the same error. Have you managed to solve the problem ? Thanks, Camille — Reply to this email directly, view it on GitHub<#4411 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/A6CQP6SZD2QXLEKVOS43IEDYSS77PAVCNFSM6AAAAAAW3NEE3GVHI2DSMVQWIX3LMV43SRDJONRXK43TNFXW4Q3PNVWWK3TUHM4DIMBWHEZTI>. You are receiving this because you authored the thread.Message ID: ***@***.***>

0 replies

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Fortran77 compiler missing? #4411

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Homebrew

Fortran77 compiler missing? #4411

Matteo-Malve Apr 12, 2023

Output of brew config

Output of brew doctor

Description of issue

1st occurrence of the error:

2nd occurrence of the error:

Conclusions

Replies: 4 comments · 1 reply

carlocab Apr 12, 2023

Matteo-Malve Apr 12, 2023 Author

cho-m Apr 13, 2023

camilleebernard Feb 8, 2024

Matteo-Malve Feb 8, 2024 Author

Matteo-Malve
Apr 12, 2023

Output of `brew config`

Output of `brew doctor`

Replies: 4 comments 1 reply

carlocab
Apr 12, 2023

Matteo-Malve Apr 12, 2023
Author

cho-m
Apr 13, 2023

camilleebernard
Feb 8, 2024

Matteo-Malve
Feb 8, 2024
Author