Skip to content

@Ken-Lau-Lab Ken Lau Lab

Change the repository type filter

All

    Repositories list

    17 repositories

    • dropkick

      Public
      Automated cell filtering for single-cell RNA sequencing data
      Python
      •
      MIT License
      •8•1•0•0•Updated Oct 11, 2024Oct 11, 2024

    • MTGR1_SI_stem_cell_analysis

      Public
      Code used to generate scRNA-seq analysis figures in Short et al. (2024) 'MTGR1 is required to maintain small intestinal stem cell populations'
      Jupyter Notebook
      •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • NSC-seq

      Public
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated May 29, 2024May 29, 2024

    • spatial_CRC_atlas

      Public
      Code to reproduce results from Heiser, et al. (2023)
      Jupyter Notebook
      •
      MIT License
      •1•1•2•0•Updated Apr 3, 2024Apr 3, 2024

    • single-cell-lectures

      Public
      Lecture contents for single-cell analysis in Python
      Jupyter Notebook
      •1•0•0•0•Updated Feb 13, 2024Feb 13, 2024

    • MILWRM

      Public
      Consensus tissue region identification from multiplex molecular image data for digital pathology
      Python
      •
      MIT License
      •2•1•0•0•Updated Feb 9, 2024Feb 9, 2024

    • spatial_CRC_atlas_imaging

      Public
      MATLAB
      •0•1•0•0•Updated Jan 5, 2024Jan 5, 2024

    • AmbiQuant

      Public
      Quantification of scRNA-seq raw data quality
      Jupyter Notebook
      •0•2•1•0•Updated Sep 18, 2023Sep 18, 2023

    • pCreode

      Public
      An algorithm for mapping cell state transitions.
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •13•0•0•0•Updated Feb 21, 2023Feb 21, 2023

    • STAR_Protocol

      Public
      Python
      •
      MIT License
      •8•4•0•0•Updated Jan 9, 2023Jan 9, 2023

    • DR-structure-preservation

      Public
      A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
      Python
      •6•0•0•0•Updated Dec 1, 2022Dec 1, 2022

    • miRNA_CSNK_human_analysis

      Public
      Exploring oncogenic KRAS suppression on global miRNA function in human patient samples
      Jupyter Notebook
      •0•0•0•0•Updated Aug 23, 2022Aug 23, 2022

    • IL23Ranalysis

      Public
      Human dataset involved vs. uninvolved
      Jupyter Notebook
      •0•0•0•0•Updated Jul 21, 2022Jul 21, 2022

    • STAR_Methods

      Public
      This repository contains examples of code used to generate the figures in the manuscript: Human colorectal pre-cancer atlas identifies distinct molecular programs underlying two major subclasses of pre-malignant tumors
      Jupyter Notebook
      •3•2•2•0•Updated Jul 1, 2022Jul 1, 2022

    • Ensemble-SCENIC

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Jan 10, 2022Jan 10, 2022

    • Ken-Lau-Lab.github.io

      Public
      JavaScript
      •0•1•0•0•Updated Apr 29, 2021Apr 29, 2021

    • NVR

      Public
      NVR is a python implementation of gene feature selection used in Welch et al.,2016
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •5•0•0•0•Updated Nov 1, 2020Nov 1, 2020