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alphadia
Publicmodular & open DIA searchalphapeptdeep
PublicDeep learning framework for proteomicsalphabase
PublicInfrastructure of AlphaX ecosystemalphapeptstats
PublicPython Package for the downstream analysis of mass-spectrometry-based proteomics datascPortrait
Publicalphashared
Publicpy-lmd
Publictimsrust
PublicscPortrait-notebooks
Publicalphatims
PublicAn open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.pydiaid
Publicdirectlfq
PublicFast and accurate label-free quantification for small and very large numbers of proteomesalphamap
PublicAn open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.alpharaw
PublicAn open-source Python package to unify raw MS data accession and storage.SPARCStools
Publicalphasynchro
PublicOmicLearn
Public🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics dataSPARCSpy
Publicalphaviz
PublicAlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.alphapept
PublicA modular, python-based framework for mass spectrometry. Powered by nbdev.PeptDeep-HLA
PublicDL model to predict HLA peptide presentationstructuremap_analysis
Publicstructuremap
PublicSPARCS_pub_figures
PublicMitoPhos
Publictimspeak
Publicslurm_scripts
Publicrefquant
Publicsingle-cell-DVP
Public