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    28 repositories

    • MattNolanLab.github.io

      Public template
      The lab website!
      HTML
      •11k•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • eLife_Grid_anchoring_2024

      Public
      Code for reproducing plots in Clark and Nolan 2024
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • in_vivo_ephys_openephys

      Public
      Analysis for in vivo electrophysiology recordings saved in open ephys format.
      Python
      •
      GNU General Public License v3.0
      •0•0•18•0•Updated Feb 13, 2024Feb 13, 2024

    • psam_pilot

      Public
      Repository for analysing and plotting data from pilot experiment testing inactivation of L1 & L2 INs with an ultrapotent PSAM-PSEM system. Magnus CJ, Lee PH, Bonaventura J, Zemla R, Gomez JL, Ramirez MH, Hu X, Galvan A, Basu J, Michaelides M, Sternson SM. Ultrapotent chemogenetics for research and potential clinical applications. Science. 2019 Apr
      R
      •1•0•0•0•Updated May 25, 2023May 25, 2023

    • nolan-brainrender

      Public
      Repository for plotting different brain areas using BrainRender
      Python
      •5•0•0•0•Updated Feb 14, 2023Feb 14, 2023

    • pySPAD-rtd

      Public
      read the docs files for the SPAD project
      Python
      •0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • lec_to_mec

      Public
      Analysis code used to generate figures and statistical ouputs for https://www.biorxiv.org/content/10.1101/2022.08.25.505296v1
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 30, 2022Dec 30, 2022

    • Stereo_targeting

      Public
      Visualise injection / tetrode trajectories
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 30, 2022Dec 30, 2022

    • openephys-fileIO

      Public
      For writing of continuous and binary file format of open-ephys
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 25, 2022Nov 25, 2022

    • OE_whitening

      Public
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 11, 2022Nov 11, 2022

    • OESpikeUtilities

      Public
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 11, 2022Nov 11, 2022

    • SpatialEphysAnalysis

      Public
      Analysis for in vivo extracellular recordings.
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 11, 2022Nov 11, 2022

    • Ramp_analysis

      Public
      HTML
      •
      MIT License
      •4•1•0•0•Updated Aug 23, 2022Aug 23, 2022

    • Ramp_simulations

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 11, 2022Aug 11, 2022

    • R.Tutorial

      Public
      Python
      •2•1•0•0•Updated Jan 14, 2021Jan 14, 2021

    • grid_cell_analysis

      Public
      Analysis for grid cells, grid fields, and head direction.
      Python
      •
      GNU General Public License v3.0
      •6•18•0•0•Updated Oct 26, 2020Oct 26, 2020

    • Tetroplater

      Public
      An open-source circuit for microwire tetrode gold plating
      MIT License
      •9•0•0•0•Updated Aug 22, 2020Aug 22, 2020

    • Inter_Intra_Variation_Executable

      Public
      Code for executable version of Pastoll et al. 2020
      R
      •
      GNU General Public License v2.0
      •1•1•0•0•Updated Aug 16, 2020Aug 16, 2020

    • Inter_Intra_Variation

      Public
      Analyses for investigation of large scale organisation of stellate cell properties
      HTML
      •
      GNU General Public License v2.0
      •2•0•0•0•Updated Jul 6, 2020Jul 6, 2020

    • EphysAnalysisTools

      Public
      Extracellular electrophysiology data analysis tools
      neuroscienceelectrophysiologyhacktoberfest
      Python
      •0•0•2•0•Updated Oct 5, 2019Oct 5, 2019

    • Tennantetal2018

      Public
      Code used for behavioural analysis in Tennant et al, 2018 (Cell Reports)
      HTML
      •0•1•0•0•Updated Sep 18, 2018Sep 18, 2018

    • Theta-Sequence-Network-Model

      Public
      Code for the 2016 eLife paper
      Python
      •1•1•0•0•Updated Dec 5, 2016Dec 5, 2016

    • Independent-Theta-Phase-Coding

      Public
      Code for 2015 eLife paper
      MATLAB
      •1•4•0•0•Updated Nov 15, 2016Nov 15, 2016

    • ei-attractor

      Public
      Excitatory-Inhibitory continuous attractor model of grid cells.
      Python
      •
      GNU General Public License v3.0
      •2•6•0•0•Updated Jul 2, 2015Jul 2, 2015

    • gridcells

      Public
      Grid cell data analysis package.
      Python
      •
      GNU General Public License v3.0
      •8•6•4•0•Updated Jun 8, 2015Jun 8, 2015

    • simtools

      Public
      You want to run quick simulations. You want to build them fast and parameterize them. Use simtools.
      Python
      •
      GNU General Public License v2.0
      •1•2•0•0•Updated Jun 2, 2015Jun 2, 2015

    • Ramsden_MEC

      Public
      Registration pipeline for Allen Brain Atlas data
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•0•Updated Oct 13, 2014Oct 13, 2014

    • PSICS

      Public
      PSICS - Parallel Stochastic Ion Channel Simulator
      Java
      •2•0•0•0•Updated May 13, 2014May 13, 2014