SMRUCC

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27 repositories

GCModeller
Public
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
dotnet genome-annotation gcmodeller scibasic microsoft-visualbasic biological-data-analysis r-language single-cell bioinformatics genomics
Visual Basic .NET
•
GNU General Public License v3.0
•11•33•0•0•Updated Nov 27, 2024Nov 27, 2024
Erica
Public
single-cell and spatial transcriptomics data analysis toolkit
HTML
•
MIT License
•0•0•0•0•Updated Nov 27, 2024Nov 27, 2024
gcmodeller.org-website
Public
HOME page of http://gcmodeller.org website
CSS
•1•0•0•0•Updated Nov 25, 2024Nov 25, 2024
cell-render
Public
R# package of workflow script for create the virtual cell model from the genbank source
HTML
•
MIT License
•0•1•0•0•Updated Nov 23, 2024Nov 23, 2024
GCModeller-workbench
Public
GCModeller CAD workbench
TypeScript
•
GNU General Public License v3.0
•2•2•0•0•Updated Nov 15, 2024Nov 15, 2024
BlueprintCAD
Public
Auto generated bio-CAD blueprint by Machine Learning
svg gcmodeller microsoft-visualbasic kegg biocad
Visual Basic .NET
•1•1•0•0•Updated Oct 12, 2024Oct 12, 2024
GCA_000005845.2_ASM584v2_genomic
Public
Escherichia coli str. K-12 substr. MG1655 virtual cell modelling
R
•
MIT License
•0•1•0•0•Updated May 21, 2023May 21, 2023
.github
Public
MIT License
•0•0•0•0•Updated Jul 8, 2022Jul 8, 2022
R.Bioinformatics
Public
R language bioinformatics analysis package wrapper for VisualBasic
r visualbasic microsoft-visualbasic rdotnet bioinformatics
Visual Basic .NET
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GNU General Public License v3.0
•4•8•0•0•Updated Nov 20, 2021Nov 20, 2021
GCModeller.Cytoscape
Public
GCModeller biological network visualization tools based on the Cytoscape
visualization network cytoscape gcmodeller vb scibasic microsoft-visualbasic
Visual Basic .NET
•
GNU General Public License v3.0
•1•3•0•0•Updated Oct 23, 2020Oct 23, 2020
vcellkit
Public
GCModeller VirtualCell toolkit
gcmodeller microsoft-visualbasic virtualcell virtual-cell
Visual Basic .NET
•3•2•0•0•Updated Oct 23, 2020Oct 23, 2020
PLAS.NET
Public
Biosystem analysis tool based on SSystem
Visual Basic .NET
•
GNU General Public License v3.0
•1•2•0•0•Updated Oct 16, 2020Oct 16, 2020
Sequence-Patterns-Toolkit
Public
Sequence feature loci site analysis toolkit
Visual Basic .NET
•
GNU General Public License v3.0
•2•2•0•0•Updated Oct 10, 2020Oct 10, 2020
ncbi-localblast
Public
NCBI localblast toolkit for GCModeller
Visual Basic .NET
•
GNU General Public License v3.0
•1•3•0•0•Updated Sep 29, 2020Sep 29, 2020
GCModeller.Circos
Public
Circos API for GCModeller
Visual Basic .NET
•
GNU General Public License v3.0
•2•2•0•0•Updated Sep 29, 2020Sep 29, 2020
GO_gene-ontology
Public
Gene Ontology Parser for GCModeller
Visual Basic .NET
•
GNU General Public License v3.0
•1•1•0•0•Updated Sep 29, 2020Sep 29, 2020
Xanthomonas_campestris_8004_uid15
Public
[Xanthomonas campestris pv. campestris 8004] GCModeller genomics Modelling Project
genome network palindrome gcmodeller ncbi xanthomonas-campestris-8004-uid15 pathway
R
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Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Jul 27, 2020Jul 27, 2020
GCModeller.Core
Public
GCModeller Individual Components: GCModeller base core assembly library on common biological database read and write I/O
bioinformatics genbank scibasic uniprot ncbi kegg gcmodeller
Visual Basic .NET
•
GNU General Public License v3.0
•2•4•0•0•Updated Jul 26, 2020Jul 26, 2020
gcmodeller-developer
Public
JavaScript
•0•1•0•0•Updated Jun 9, 2020Jun 9, 2020
R-dev_studio
Public
the R# language app dev studio, inspired by Rstudio
MIT License
•1•1•0•0•Updated May 3, 2020May 3, 2020
biom-format
Public
The Biological Observation Matrix (BIOM) Format Project
Python
•
Other
•95•1•0•0•Updated Nov 14, 2016Nov 14, 2016
RegPrecise
Public
RegPrecise Motif Database
MIT License
•3•2•0•0•Updated Sep 19, 2016Sep 19, 2016
genome-synteny
Public
GCModeller visualization tools
Visual Basic
•
GNU General Public License v3.0
•1•2•0•0•Updated Sep 3, 2016Sep 3, 2016
SBML
Public
Simple SBML parser of GCModeller
Web Ontology Language
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GNU General Public License v3.0
•1•2•0•0•Updated Aug 31, 2016Aug 31, 2016
docs.gcmodeller.org
Public
Document library of GCModeller
GNU General Public License v3.0
•0•0•0•0•Updated Jul 27, 2016Jul 27, 2016
HMM
Public
Hidden-Markov-Model in VisualBasic
Visual Basic
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MIT License
•3•1•0•0•Updated Apr 15, 2016Apr 15, 2016
seqpipe
Public
a SEQuencing data analysis PIPEline framework
Perl
•4•0•0•0•Updated Feb 9, 2016Feb 9, 2016