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    4 repositories

    • cfDNAtools

      Public
      cfDNAtools - scripts for cfDNA processing
      Perl
      •0•1•0•0•Updated Feb 11, 2023Feb 11, 2023

    • ChromHL

      Public
      Predicting microdomain formation in chromatin from the DNA sequence and protein concentrations
      MATLAB
      •
      Other
      •0•2•0•0•Updated Apr 7, 2022Apr 7, 2022

    • MatrixProteinBinding

      Public
      Uses the transfer matrix method to compute protein binding at single base pair resolution including competition from nucleosomes and DNA methylation if provided
      MATLAB
      •0•0•0•0•Updated Jul 12, 2019Jul 12, 2019

    • TFaffinity

      Public
      Code for aggregating transcription factor binding affinity profiles in regions defined by a bed file
      MATLAB
      •0•1•0•0•Updated Nov 26, 2018Nov 26, 2018