Skip to content

@UC-Davis-molecular-computing UC-Davis Molecular Computing Group

Change the repository type filter

All

    Repositories list

    8 repositories

    • scadnano

      Public
      Web application for designing DNA structures such as DNA origami.
      dna-sequencescadnanodna-origamidna-structures
      Dart
      •
      MIT License
      •13•22•186•7•Updated Oct 24, 2024Oct 24, 2024

    • scadnano-python-package

      Public
      Python scripting library for generating designs readable by scadnano.
      dna-sequencescadnanodna-structuresdna-origami
      Python
      •
      MIT License
      •7•14•41•4•Updated Oct 21, 2024Oct 21, 2024

    • gpac

      Public
      package for numerically integrating differential equations (front-end for scipy.solve_ivp) using simpler syntax than scipy
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 28, 2024Sep 28, 2024

    • nuad

      Public
      Nucleic acid sequence designer
      Jupyter Notebook
      •
      MIT License
      •6•9•36•3•Updated Aug 27, 2024Aug 27, 2024

    • labelator

      Public
      Python package for creating PDF documents that can be printed onto circular sticky labels that can be stuck to test tubes.
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

    • ppsim

      Public
      Python package for simulating population protocols
      Python
      •
      MIT License
      •5•9•18•0•Updated Oct 11, 2023Oct 11, 2023

    • simd-dna

      Public
      A Python simulator for the SIMD||DNA model of computation, as defined in the paper https://doi.org/10.1007/978-3-030-26807-7_12
      Python
      •
      MIT License
      •3•3•0•0•Updated Mar 11, 2023Mar 11, 2023

    • simd-dna-web-simulator

      Public
      A visual simulator for the SIMD||DNA model
      TypeScript
      •0•0•0•0•Updated May 31, 2022May 31, 2022