Repositories list

• spatialbio

  Public template
  Jekyll Template for Spatial Biology Website

  HTML

  •

  MIT License

  •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• gen575

  Public
  Gen 575: Fundamentals of Biomedical Instrumentation

  Jupyter Notebook

  •0•3•0•0•Updated May 21, 2024May 21, 2024

• PaintSHOP_resources

  Public
  A collection of downloadable resources accompanying the PaintSHOP application.

  MIT License

  •1•7•3•0•Updated Feb 21, 2024Feb 21, 2024

• TigerFISH

  Public
  Tigerfish

  fishgenomicsmicroscopy+ 1repetitive-dna

  HTML

  •

  MIT License

  •2•10•1•0•Updated Jan 30, 2024Jan 30, 2024

• PaintSHOP_pipeline

  Public
  A scalable machine learning pipeline for probe specificity prediction.

  HTML

  •

  MIT License

  •6•11•3•0•Updated Jan 23, 2024Jan 23, 2024

• PaintSHOP

  Public
  Shiny App for interactive oligo probe design.

  R

  •1•6•4•0•Updated Oct 13, 2023Oct 13, 2023

• SABER-Spot-Quant

  Public
  Python scripts to segment/quantify smFISH spots and local proteome labeling from SABER and peroxidase-SABER microscopy images.

  Jupyter Notebook

  •0•0•0•0•Updated Feb 14, 2023Feb 14, 2023

• gen559.2023

  Public
  Support for WI 2023 GEN559

  MIT License

  •0•0•0•0•Updated Jan 3, 2023Jan 3, 2023

• Decode-PAINT

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 18, 2022Oct 18, 2022

• Fluidics-system-for-FISH-1

  Public
  C++

  •

  MIT License

  •1•0•0•0•Updated Mar 9, 2022Mar 9, 2022

• OligoMiner

  Public
  Genome-scale design tool for oligo hybridization probes

  Python

  •

  MIT License

  •18•58•2•0•Updated May 19, 2021May 19, 2021

• example_repo_559

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 13, 2020Nov 13, 2020