Repositories list

• mteapy

  Public
  Library for Metabolic Task Enrichment Analysis.

  Python

  •

  Other

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• PhysiCell

  Public
  PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!

  Jupyter Notebook

  •100•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• te-epidemics

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• Bojos_supercomputacio

  Public
  Bojos per la Supercomputació es un curso desarrollado por el BSC y está enmarcado en el programa Bojos per la Ciència, de la Fundació Catalunya la Pedrera.

  Jupyter Notebook

  •2•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• tda_analysis

  Public
  R

  •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

• rgenexcom

  Public
  Web application for the Manuscript "From Comorbidities to Gene Expression Fingerprints and Back"

  R

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated Jun 17, 2024Jun 17, 2024

• Human-GEM

  Public
  The generic genome-scale metabolic model of Homo sapiens

  MATLAB

  •

  Creative Commons Attribution 4.0 International

  •42•1•0•0•Updated May 10, 2024May 10, 2024

• MMCAcovid19.jl

  Public
  Microscopic Markov Chain Approach to model the spreading of COVID-19

  Julia

  •

  GNU Affero General Public License v3.0

  •9•0•0•0•Updated Mar 27, 2024Mar 27, 2024

• biohackathon_germany_2023

  Public
  Project "Is Sex Representation In Biological Research Experiments Adequately Funded?: A Study of the European Database CORDIS"

  Jupyter Notebook

  •0•2•0•0•Updated Mar 12, 2024Mar 12, 2024

• penguin_analytics

  Public
  PENGUIN Dash web app

  Python

  •0•0•0•0•Updated Oct 24, 2023Oct 24, 2023

• penguin_software

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Oct 24, 2023Oct 24, 2023

• IID-2018-cancer-PPIs-comparison

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 6, 2023Apr 6, 2023

• Explainable_Synthetic_Data_Generation_Medulloblastoma

  Public
  Explainable synthetic data generation for paediatric cancer research

  HTML

  •

  MIT License

  •0•1•0•0•Updated Jun 22, 2022Jun 22, 2022

• PhysiBoSSv2

  Public
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks

  C++

  •100•1•0•0•Updated May 18, 2022May 18, 2022

• multiAffinity

  Public
  Study how gene dysregulation propagates on a multilayer network

  rna-seqcommunity-detectionnetworks+ 1command-line-tool

  C

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Apr 13, 2022Apr 13, 2022

• spheroid-tnf-v2-emews

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Mar 22, 2022Mar 22, 2022

• MeSH_bias

  Public
  MeSH terms about 'bias' to identify related PubMed articles

  Jupyter Notebook

  •0•0•0•0•Updated Dec 27, 2021Dec 27, 2021

• IGTP_biomarker_study

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 22, 2021Dec 22, 2021

• mela

  Public
  EMEWS Model Exploration Library Archive

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Sep 23, 2021Sep 23, 2021

• methods-Genomics

  Public
  HTML

  •0•2•17•0•Updated Jul 27, 2021Jul 27, 2021

• DDInteract

  Public
  Shiny app to visualise drug-drug interactions in Blumenau, Catalonia and Indianapolis

  R

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Jul 15, 2021Jul 15, 2021

• neurodegenerative_diseases-cancer_comorbidities

  Public
  ShinyApp for the visualisation of the pathways associated with neurodegenerative disorders (Alzheimer's and Parkinson's diseases), different types of cancer, and their comorbidity relations

  R

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated Jun 9, 2021Jun 9, 2021

• prognosTF

  Public
  Python

  •2•1•0•0•Updated Feb 26, 2021Feb 26, 2021

• loopnet

  Public
  R

  •0•0•0•0•Updated Sep 24, 2020Sep 24, 2020

• PhysiBoSSv2-EMEWS

  Public
  EMEWS template for PhysiBoSSa

  C++

  •6•0•0•0•Updated Sep 2, 2020Sep 2, 2020

• tutorial_setuptools

  Public
  Easy steps to build your own command line application with Python

  Python

  •0•0•0•0•Updated Dec 16, 2019Dec 16, 2019

• epintegrate

  Public
  integration of genetic and epigenetic data

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Sep 27, 2019Sep 27, 2019

• PhysiCell-EMEWS

  Public
  Official code repository for the PhysiCell-EMEWS project

  C++

  •4•0•0•0•Updated Jan 31, 2018Jan 31, 2018