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@cajal Cajal MICrONS Team

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    48 repositories

    • foundation

      Public
      Neuronal recordings and Foundation models
      Python
      •
      GNU Lesser General Public License v2.1
      •3•1•0•3•Updated Jan 9, 2025Jan 9, 2025

    • MICrONS-to-nwb

      Public
      Jupyter Notebook
      •
      MIT License
      •4•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • fnn

      Public
      Python
      •0•0•0•0•Updated Dec 22, 2024Dec 22, 2024

    • microns-coregistration

      Public
      microns functional / EM data coregistration
      Python
      •3•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • microns-materialization

      Public
      EM data materialization from Princeton & AIBS
      Python
      •3•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • microns-manual-proofreading

      Public
      microns manual proofreading
      Python
      •1•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • microns-proximities

      Public
      Repo for computing axonal-dendritic proximities in the MICrONS dataset
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • microns-morphology

      Public
      modules and schemas for morphological processing of EM datasets
      Python
      •2•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • pipeline

      Public
      Schemata and libraries for neuroscientific data
      Python
      •
      GNU Lesser General Public License v3.0
      •44•20•9•7•Updated Oct 21, 2024Oct 21, 2024

    • trippy-monet

      Public
      The public repository describing the monet and trippy stimuli
      MIT License
      •3•1•0•1•Updated Jul 30, 2024Jul 30, 2024

    • at-image

      Public
      image processing utilties
      Python
      •1•0•0•0•Updated Jan 28, 2024Jan 28, 2024

    • datajoint-plus

      Public
      A DataJoint extension that integrates hashes and other features.
      Python
      •
      GNU Lesser General Public License v2.1
      •3•3•1•0•Updated Jan 9, 2024Jan 9, 2024

    • microns-utils

      Public
      utils for MICrONS
      Python
      •
      GNU Lesser General Public License v2.1
      •2•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • neuro_data

      Public
      Neuro Datasets for System Identification
      Python
      •18•2•1•3•Updated Jan 2, 2024Jan 2, 2024

    • microns-base

      Public
      base environment for MICrONS repositories
      Dockerfile
      •2•0•0•0•Updated Dec 6, 2023Dec 6, 2023

    • datascience-notebook

      Public
      custom built environment for data analysis
      Dockerfile
      •2•0•0•0•Updated Oct 19, 2023Oct 19, 2023

    • djutils

      Public
      Datajoint Utilities
      Jupyter Notebook
      •
      GNU Lesser General Public License v2.1
      •2•1•1•0•Updated Sep 21, 2023Sep 21, 2023

    • dandi_microns_phase3_nda

      Public
      tutorials for downloading and operating on dandiset for microns minnie volume functional data
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 23, 2023Aug 23, 2023

    • AvaTr

      Public
      Official implementation of the paper "AvaTr: One-Shot Speaker Extraction with Transformers"
      Python
      •1•3•0•0•Updated Jul 19, 2023Jul 19, 2023

    • microns_phase3_nda

      Public
      nda schema for MICrONS phase3
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •41•5•2•0•Updated Jul 10, 2023Jul 10, 2023

    • pipecontrol

      Public
      Website for interactions with pipeline.
      Python
      •
      MIT License
      •7•1•1•0•Updated Jul 7, 2023Jul 7, 2023

    • microns-nda-access

      Public
      Provides instructions and Docker configurations for accessing the microns_phase3_nda schema and/or an isolated database container.
      Dockerfile
      •
      GNU General Public License v3.0
      •7•6•4•1•Updated Jun 29, 2023Jun 29, 2023

    • databridge

      Public
      Data Bridge
      Python
      •0•0•0•0•Updated Jun 13, 2023Jun 13, 2023

    • microns-nda

      Public
      microns neural data access
      Python
      •3•1•0•1•Updated Jan 2, 2023Jan 2, 2023

    • microns-dashboard

      Public
      Schemas and notebooks for the MICrONS Jupyterhub Dashboard
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 13, 2022Oct 13, 2022

    • 21617_data_release

      Public
      functional data release for animal 21617
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 11, 2022Aug 11, 2022

    • featurevis

      Public
      Visualize features cells are responsive to via gradient ascent.
      Jupyter Notebook
      •
      MIT License
      •2•1•0•1•Updated May 3, 2022May 3, 2022

    • static_v1_data_release

      Public
      V1 imaging ROI, static natural image stimulus
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 17, 2022Mar 17, 2022

    • 9161_data_release

      Public
      packaging and release of basil dataset
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 12, 2021Nov 12, 2021

    • 8973_data_release

      Public
      packaging and release of pinky dataset
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 12, 2021Nov 12, 2021