Repositories list

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •23•38•52•3•Updated Nov 5, 2024Nov 5, 2024

• single-cell-data-portal

  Public
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •14•64•252•16•Updated Nov 5, 2024Nov 5, 2024

• cryoet-data-portal

  Public
  CryoET Data Portal

  TypeScript

  •

  MIT License

  •10•17•267•7•Updated Nov 5, 2024Nov 5, 2024

• edu-design-system

  Public
  Design system for Education Projects

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •4•29•1•0•Updated Nov 5, 2024Nov 5, 2024

• czgenepi

  Public
  Python

  •

  MIT License

  •4•13•1•7•Updated Nov 5, 2024Nov 5, 2024

• cryoet-data-portal-backend

  Public
  CryoET Data Portal API server & ingestion scripts

  Python

  •

  MIT License

  •2•1•6•4•Updated Nov 5, 2024Nov 5, 2024

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1design-system

  TypeScript

  •

  MIT License

  •7•25•109•5•Updated Nov 4, 2024Nov 4, 2024

• happy

  Public
  Happy Path Deployment Tool

  kubernetesinfrastructureterraform

  Go

  •

  MIT License

  •2•18•13•18•Updated Nov 4, 2024Nov 4, 2024

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •1•4•6•4•Updated Nov 4, 2024Nov 4, 2024

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •3•5•1•5•Updated Nov 1, 2024Nov 1, 2024

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •25•64•3•4•Updated Nov 1, 2024Nov 1, 2024

• galago-labs

  Public
  Development fork for Galago -- see github.com/chanzuckerberg/galago for stable version

  TypeScript

  •

  MIT License

  •3•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• czid-web

  Public
  Infectious Disease Sequencing Platform

  scienceresearchbiology+ 12sequencingcomputational-biologynext-generation-sequencingbioinformatics-pipelineglobal-healthvirologyinfectious-diseases+ 5

  TypeScript

  •

  MIT License

  •24•79•0•2•Updated Oct 31, 2024Oct 31, 2024

• galago

  Public
  Interpretation aids for genomic epidemiology

  TypeScript

  •

  MIT License

  •3•8•63•0•Updated Oct 31, 2024Oct 31, 2024

• cryoet-data-portal-neuroglancer

  Public
  CryoET Data Portal Neuroglancer configuration helper

  Python

  •

  MIT License

  •2•1•1•4•Updated Oct 31, 2024Oct 31, 2024

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •22•84•121•13•Updated Oct 30, 2024Oct 30, 2024

• homebrew-tap

  Public
  Ruby

  •2•2•2•0•Updated Oct 30, 2024Oct 30, 2024

• argus-artifacts

  Public
  MIT License

  •0•1•0•0•Updated Oct 30, 2024Oct 30, 2024

• argo-helm-charts

  Public
  Smarty

  •0•0•0•2•Updated Oct 30, 2024Oct 30, 2024

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •2•11•59•4•Updated Oct 29, 2024Oct 29, 2024

• cellxgene

  Public
  An interactive explorer for single-cell transcriptomics data

  datavizscrna-seqtranscriptomics+ 2visualizationscientific

  JavaScript

  •

  MIT License

  •118•631•127•0•Updated Oct 29, 2024Oct 29, 2024

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  terraforminfrastructure-as-codeinfrastructure

  Go

  •

  MIT License

  •20•295•37•2•Updated Oct 28, 2024Oct 28, 2024

• platformics

  Public
  Codegen Python GraphQL Entity Framework

  Python

  •

  MIT License

  •0•3•14•14•Updated Oct 26, 2024Oct 26, 2024

• czid-amr-heatmap

  Public
  Prototype code for creating CZID-esque heatmap using AMR pipeline data

  Jupyter Notebook

  •

  MIT License

  •0•0•0•1•Updated Oct 22, 2024Oct 22, 2024

• axe-storybook-testing

  Public
  Command line interface for testing Storybook stories for accessibility.

  accessibilityaxetesting

  TypeScript

  •

  MIT License

  •7•52•0•0•Updated Oct 21, 2024Oct 21, 2024

• czid-workflows

  Public
  Portable WDL workflows for CZ ID production pipelines

  Python

  •

  MIT License

  •7•37•3•8•Updated Oct 7, 2024Oct 7, 2024

• open-science

  Public
  curated links and customized materials to support biomedical researchers in implementing open science approaches

  trainingopen-sourcecomputational-biology+ 4open-sciencereproducibilitybiomedical-researchreproducible-computational-methods

  JavaScript

  •

  Other

  •2•8•33•0•Updated Oct 5, 2024Oct 5, 2024

• camelot

  Public
  Go

  •

  MIT License

  •0•1•0•0•Updated Oct 3, 2024Oct 3, 2024

• go-misc

  Public
  miscellaneous go code

  Go

  •

  MIT License

  •3•7•1•2•Updated Sep 26, 2024Sep 26, 2024

• oss-archetypes

  Public
  framework and guidelines for the many ways of doing OSS in science

  Creative Commons Attribution Share Alike 4.0 International

  •1•1•3•0•Updated Sep 26, 2024Sep 26, 2024