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    44 repositories

    • code-docker-bismark

      Public
      Tool specialzed for analysis of Bisulfite-Seq (BS-Seq) data
      Shell
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Nov 27, 2024Nov 27, 2024

    • code-docker-fastqc

      Public
      Shell
      •
      GNU General Public License v3.0
      •1•0•2•0•Updated Nov 21, 2024Nov 21, 2024

    • code-docker-sniffles2

      Public
      Shell
      •1•0•1•0•Updated Oct 23, 2024Oct 23, 2024

    • docker-for-Fastqc-CZY

      Public
      Shell
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • code-docker-ruyi

      Public
      Ruyi is a docker container for compress and decompress data for auto archival purpose
      GNU General Public License v3.0
      •0•0•1•0•Updated Oct 17, 2024Oct 17, 2024

    • code-docker-aligner-bwamem2

      Public
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • doc-manual-pub

      Public
      Public repository containing manuals
      R
      •
      GNU General Public License v3.0
      •8•0•2•0•Updated Sep 29, 2024Sep 29, 2024

    • code-docker-TrimGalore

      Public
      A wrapper around Cutadapt and FastQC for adapter and quality trimming to FastQ files, with extra functionality for RRBS data
      Perl
      •
      GNU General Public License v3.0
      •151•0•0•0•Updated Sep 28, 2024Sep 28, 2024

    • code-docker-script-lib

      Public
      Library of scripts commonly used in docker
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • code-np-pod5

      Public
      tool for converting fast5 to pod5
      C++
      •
      Other
      •19•0•1•1•Updated Sep 6, 2024Sep 6, 2024

    • docker-genome-browser

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • doc-lib-latex

      Public
      Commonly used latex acrynoms and glossary
      TeX
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • cuhk-haosun.github.io

      Public
      HTML
      •
      MIT License
      •6•0•0•1•Updated Jul 30, 2024Jul 30, 2024

    • code-m6anet

      Public
      Detection of m6A from direct RNA-Seq data
      Python
      •
      MIT License
      •19•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • course-MBI6013

      Public
      Material for Msc. research project MBI6013
      TeX
      •
      GNU General Public License v3.0
      •2•0•7•0•Updated Jul 3, 2024Jul 3, 2024

    • doc-journal-club

      Public
      storing publications for journal club
      GNU General Public License v3.0
      •6•1•2•1•Updated Jun 26, 2024Jun 26, 2024

    • doc-latex-template

      Public template
      latex template
      TeX
      •2•0•0•0•Updated May 21, 2024May 21, 2024

    • doc-template-ACM-Journals-Primary-Article-Template

      Public
      latex ACM Journals Primary Article Template
      TeX
      •0•0•0•0•Updated Apr 27, 2024Apr 27, 2024

    • nginx-static-file-server

      Public
      nginx static file server with username password protection served in docker
      Dockerfile
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Apr 18, 2024Apr 18, 2024

    • code-training-docker

      Public
      docker training workshop for students
      Dockerfile
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Apr 13, 2024Apr 13, 2024

    • cuhktest.github.io

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • doc-figure-Neural-Network-Architecture

      Public
      Diagrams for visualizing neural network architecture (Created for draw.io)
      MIT License
      •468•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • doc-template-NSFC

      Public template
      国家自然科学基金申请书正文（面上项目）LaTeX 模板（非官方）
      TeX
      •
      MIT License
      •207•0•0•0•Updated Jan 19, 2024Jan 19, 2024

    • code-example-lsf

      Public
      LSF example code
      Shell
      •0•0•0•0•Updated Jan 18, 2024Jan 18, 2024

    • doc-nanopore-bacteria-detection

      Public
      0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • pub-doc-cfDNA

      Public
      Public repository containing papers related to cfDNA
      1•0•0•1•Updated Jan 2, 2024Jan 2, 2024

    • doc-rule

      Public
      Rules, code of conduct
      doc
      0•0•0•0•Updated Dec 26, 2023Dec 26, 2023

    • code-seqware-jars

      Public
      code seqware jars
      0•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • code-pub-seqware-BWA-workflow

      Public
      This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
      Perl
      •
      GNU General Public License v3.0
      •11•0•0•0•Updated Dec 19, 2023Dec 19, 2023

    • doc-patent-pub

      Public
      public patents
      0•0•2•0•Updated Nov 27, 2023Nov 27, 2023