Datasnakes

All

41 repositories

awesome-reproducible-R
Public
An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.
r reproducible-research reproducible-science ropensci r-consortium r-core rtools
R
•
The Unlicense
•0•13•1•0•Updated Dec 21, 2024Dec 21, 2024
OrthoEvolution
Public
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
python shell bash data-science bioinformatics genetics biology ftp sge phylogenetics
Python
•4•29•17•18•Updated Dec 8, 2024Dec 8, 2024
rinse
Public
A configurable installer CLI for installing R from source (sudo and non-sudo).
cli r installer r-programming package-management
Python
•
MIT License
•1•5•12•4•Updated Jul 17, 2023Jul 17, 2023
pyDAVID
Public
A python3 wrapper around the DAVID API
api annotation david python3
Python
•
MIT License
•0•1•3•0•Updated Dec 16, 2022Dec 16, 2022
github-readme-templates
Public
Easy to use README templates for a python project or python module
github markdown readme readme-template
Other
•4•4•0•0•Updated Aug 2, 2022Aug 2, 2022
htseq-count-cluster
Public
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
cli rnaseq htseq-count cluster sge htseq htseq-count-cluster
Python
•
MIT License
•0•4•5•0•Updated Feb 25, 2022Feb 25, 2022
datasnakes.github.io
Public
This is the website for the Datasnakes.
website
JavaScript
•1•1•2•0•Updated Feb 24, 2022Feb 24, 2022
snakemold
Public
management cookiecutter python3 project-management
Python
•
MIT License
•0•0•1•0•Updated Jul 15, 2020Jul 15, 2020
snakeutils
Public
A collection of tools used by the Datasnakes in their various github projects.
python3
Python
•
MIT License
•0•0•3•0•Updated Jul 15, 2020Jul 15, 2020
cookiecutter-pypackage-travisci
Public
A cookiecutter template for creating a python project & using travis ci for continuous integration.
python travis-ci cookiecutter python-package cookiecutter-template
Python
•
Other
•0•3•0•0•Updated Jun 26, 2020Jun 26, 2020
open-source-ideas
Public
💡 Submit ideas for science-related projects or packages here. 💡
python open-source open-science ideas rstats
0•2•1•0•Updated Oct 29, 2019Oct 29, 2019
beRi
Public
beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R
cli package-manager environment hackathon python3 package-management hackseq18 biohackathon r
Python
•
MIT License
•0•14•8•0•Updated Oct 28, 2019Oct 28, 2019
renv
Public
Creating virtual environments for R.
python cli r hackathon reproducible-research package-management virtual-environment renv project-environment biohackathon
Python
•
MIT License
•0•17•15•0•Updated Oct 24, 2019Oct 24, 2019
hackseq19docs
Public
View team beRi's hackseq19 presentation. 📄
hackseq beri hackseq19
CSS
•
MIT License
•0•0•0•0•Updated Oct 21, 2019Oct 21, 2019
get-beri
Public
r beri datasnakes hackseq18
CSS
•
MIT License
•0•0•2•0•Updated Oct 14, 2019Oct 14, 2019
archives
Public
💀 Where everything goes to die. 💀
archives python3 archived archive
Python
•0•0•0•0•Updated Jul 29, 2019Jul 29, 2019
orthoevol-snakemake
Public
A snakemake workflow for the OrthoEvol python package.
snakemake orthology-inference snakemake-workflow snakemake-pipelines orthoevol
Python
•
MIT License
•0•1•0•0•Updated Jul 16, 2019Jul 16, 2019
roxygen-tags
Public
A comprehensive list of roxygen tags and their use cases. 🏷️
documentation tags roxygen roxygen2 roxygen-documentation
The Unlicense
•0•4•1•0•Updated May 14, 2019May 14, 2019
shinyLimma
Public
R
•
Other
•0•0•0•0•Updated May 7, 2019May 7, 2019
py3utils
Public
Useful python utils for the everyday programmer.
Python
•
MIT License
•0•1•0•0•Updated Apr 10, 2019Apr 10, 2019
rut
Public
A cli of r utilities aimed at package and .Rprofile management.
cran r manager projects jetpack package-management packrat cli rprofile-management
Python
•
MIT License
•0•4•9•0•Updated Apr 3, 2019Apr 3, 2019
beri-isc-proposal
Public
An isc proposal to the R Consortium to elicit their support for beRi.
bioinformatics r reproducible-research ropensci r-consortium isc-proposal r-core
TeX
•0•2•2•0•Updated Dec 18, 2018Dec 18, 2018
python-hands-on-tutorial
Public
A hands-on Python3 tutorial. 🐍
interactive biology python3 python-tutorial
Python
•
MIT License
•0•4•1•0•Updated Dec 8, 2018Dec 8, 2018
RNASeek
Public
A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma
rna-seq r shiny rnaseq shiny-apps htseq deseq2 count-table
HTML
•0•2•4•0•Updated Dec 8, 2018Dec 8, 2018
shinyconfig
Public
An R package that aids in the configuration and setup of shiny apps.
shiny configuration
R
•
Other
•0•0•0•0•Updated Dec 8, 2018Dec 8, 2018
semver.org
Public
Semantic Versioning spec and website
CSS
•283•0•0•0•Updated Dec 3, 2018Dec 3, 2018
jetpack
Public
A friendly package manager for R
r install jetpack manage packrat
R
•
Other
•16•0•0•0•Updated Oct 14, 2018Oct 14, 2018
explore
Public
Community-curated topic pages on GitHub
Ruby
•
Creative Commons Attribution 4.0 International
•13k•0•1•0•Updated Sep 11, 2018Sep 11, 2018
up-for-grabs.net
Public
Jump in!
JavaScript
•
Other
•2.1k•0•0•0•Updated Aug 23, 2018Aug 23, 2018
pyVariant
Public archive
A pipeline to call variants for RNASeq implemented with python.
gatk variant-calling
0•0•1•0•Updated Jul 19, 2018Jul 19, 2018