deMirandaLab

All

5 repositories

PENGUIN
Public
Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry
spatial-analysis spatial-proteomics spatial-data-analysis mass-cytometry denoising-images multiplexed-imaging multiplexed-imaging-analysis
Jupyter Notebook
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GNU General Public License v3.0
•0•3•1•0•Updated Feb 26, 2025Feb 26, 2025
IMC_analysis_pack
Public
Software & Workflow for the analysis of imaging mass cytometry data
R
•0•0•0•0•Updated Jan 13, 2025Jan 13, 2025
SABR
Public
Workflow for Semi-automated background removal to normalise imaging mass cytometry data
MATLAB
•0•0•0•0•Updated Jan 13, 2025Jan 13, 2025
PENGUIN_fork
Public
Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry
spatial-proteomics mass-cytometry denoising-images multiplexed-imaging multiplexed-imaging-analysis
Jupyter Notebook
•
GNU General Public License v3.0
•2•3•0•0•Updated Dec 3, 2024Dec 3, 2024
MALDI-MSI-IMC
Public
Code to integrate MALDI-MSI and Imaging mass cytometry data
Python
•
GNU General Public License v3.0
•2•7•0•0•Updated May 9, 2024May 9, 2024