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@deisseroth-lab Deisseroth Lab at Stanford University

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    24 repositories

    • website-cms

      Public
      A generic and self-hostable content management system for creating, updating, and deploying sites.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • patchclamp

      Public
      Scripts for python analysis of patch-clamp recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Feb 22, 2023Feb 22, 2023

    • dask-docker

      Public
      Docker images for dask
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •151•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.3k•1•0•0•Updated Feb 8, 2023Feb 8, 2023

    • docker-stacks

      Public
      Ready-to-run Docker images containing Jupyter applications
      Python
      •
      Other
      •3k•0•0•0•Updated Jan 27, 2023Jan 27, 2023

    • two-photon

      Public
      Common scripts, libraries, and utilities for 2p experiments
      Jupyter Notebook
      •6•6•6•1•Updated May 17, 2022May 17, 2022

    • datajoint-python

      Public
      Relational data pipelines for the science lab
      Python
      •
      GNU Lesser General Public License v2.1
      •85•0•0•0•Updated Jan 21, 2022Jan 21, 2022

    • cellpose

      Public
      a generalist algorithm for cellular segmentation
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •416•1•0•0•Updated Jan 16, 2022Jan 16, 2022

    • brainreg_sherlock

      Public
      Python
      •0•0•0•0•Updated Jan 14, 2022Jan 14, 2022

    • k8s-node-termination-handler

      Public
      A solution to gracefully handle GCE VM terminations in kubernetes clusters
      Go
      •
      Apache License 2.0
      •54•0•0•0•Updated Jan 7, 2022Jan 7, 2022

    • rclone_sync

      Public
      Runs rclone to sync to Google Drive — Works within an HPC environment — Tries to catch errors gracefully and informatively
      Shell
      •
      GNU General Public License v3.0
      •2•0•0•1•Updated Jan 4, 2022Jan 4, 2022

    • bg-atlasapi

      Public
      A lightweight python module to interact with atlases for systems neuroscience
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •35•0•0•0•Updated Jan 1, 2022Jan 1, 2022

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •243•0•0•1•Updated Nov 18, 2021Nov 18, 2021

    • fpocket

      Public
      fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket …
      C
      •
      MIT License
      •63•1•0•0•Updated Oct 18, 2021Oct 18, 2021

    • data-sharing-examples

      Public
      Python
      •1•0•0•1•Updated Oct 9, 2021Oct 9, 2021

    • miniforge-images

      Public
      Container images that include conda-forge's miniforge setup
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •15•0•0•0•Updated Sep 1, 2021Sep 1, 2021

    • dcon-core

      Public
      Aperture plane light field deconvolution in the cloud
      Python
      •0•0•0•0•Updated Jul 26, 2021Jul 26, 2021

    • TeraStitcher

      Public
      A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
      C++
      •
      Other
      •32•0•0•0•Updated Jul 13, 2021Jul 13, 2021

    • croat-public

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 1, 2020Sep 1, 2020

    • CNMF_E

      Public
      Constrained Nonnegative Matrix Factorization for microEndoscopic data
      MATLAB
      •
      GNU General Public License v3.0
      •74•0•0•0•Updated Jul 27, 2020Jul 27, 2020

    • multifiber-mirror

      Public
      Private (eventually) fork of multifiber repository for new features.
      MATLAB
      •0•0•2•0•Updated Jul 23, 2020Jul 23, 2020

    • starmap

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 1, 2020Jul 1, 2020

    • cosmos-tools

      Public
      Software tools for Cortical Observation by Synchronous Multifocal Optical Sampling.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•5•0•0•Updated May 21, 2020May 21, 2020

    • multifiber

      Public
      A GUI and library for doing multi-fiber photometry
      MATLAB
      •5•18•4•0•Updated Oct 12, 2017Oct 12, 2017