Repositories list

• noctua-models

  Public
  This is the data repository for the models created and edited with the Noctua tool stack for GO.

  annotationpathwaysgeneontology+ 3noctua-modelsgo-camontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •3•10•34•2•Updated Jan 3, 2025Jan 3, 2025

• go-ontology

  Public
  Source ontology files for the Gene Ontology

  goowlgene-ontology+ 5obogeneontologyfunctional-annotationobofoundryontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •40•225•741•52•Updated Jan 3, 2025Jan 3, 2025

• wc-gocam-viz

  Public
  Web component to visualize GO-CAMs

  geneontologygo-cam

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •2•2•20•0•Updated Jan 3, 2025Jan 3, 2025

• gocam-py

  Public
  Draft data model for GO-CAMs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•1•1•Updated Jan 2, 2025Jan 2, 2025

• pipeline-raw-go-cam

  Public
  [EXPERIMENTAL] Curation GO-CAMs re-published for internal use.

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•0•Updated Dec 29, 2024Dec 29, 2024

• noctua-form-base

  Public
  librarygeneontologygo-cam+ 1annotations

  TypeScript

  •1•0•0•0•Updated Dec 28, 2024Dec 28, 2024

• web-components

  Public
  EXPERIMENTAL Unified web component library

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•3•0•Updated Dec 23, 2024Dec 23, 2024

• go-site

  Public
  A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

  documentationgene-ontologygeneontology+ 2yamlmetadata

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •89•47•253•43•Updated Dec 23, 2024Dec 23, 2024

• obographs

  Public
  Basic and Advanced OBO Graphs: specification and reference implementation

  jsongraphsowl+ 6gene-ontologyontologiesgeneontologyobofoundryontology-standardsontology

  Java

  •12•64•50•2•Updated Dec 20, 2024Dec 20, 2024

• go-annotation

  Public
  This repository hosts the tracker for issues pertaining to GO annotations.

  ontologygenescuration+ 4geneontologyfunctional-annotationannotationannotations

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•36•388•2•Updated Dec 19, 2024Dec 19, 2024

• geneontology.github.io

  Public
  Repository for storing GO documentation, directly available through the general GO site

  documentationgeneontologygithubio

  SCSS

  •

  MIT License

  •10•7•27•11•Updated Dec 19, 2024Dec 19, 2024

• pipeline

  Public
  Declarative pipeline for the Gene Ontology.

  geneontologypipeline

  BSD 3-Clause "New" or "Revised" License

  •5•5•87•2•Updated Dec 17, 2024Dec 17, 2024

• noctua-alliance-pathway-preview

  Public
  TypeScript

  •0•0•5•0•Updated Dec 17, 2024Dec 17, 2024

• go-fastapi

  Public
  Python

  •3•6•4•2•Updated Dec 13, 2024Dec 13, 2024

• amigo

  Public
  AmiGO is the public interface for the Gene Ontology.

  browserannotationsontology+ 3genesgeneontologyfunctional-annotation

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •17•30•174•25•Updated Dec 12, 2024Dec 12, 2024

• noctua-landing-page

  Public
  geneontologynoctuanoctua-models+ 1go-cam

  TypeScript

  •0•1•20•8•Updated Dec 10, 2024Dec 10, 2024

• noctua_app_stack

  Public
  geneontologynoctuanoctua-models

  HCL

  •1•0•4•1•Updated Dec 5, 2024Dec 5, 2024

• pipeline-from-goa

  Public
  The new GO pipeline that runs after GOA has made QC file products available.

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• pathways2GO

  Public
  Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)

  pathwaysgeneontologybiopax+ 2go-camontology

  Java

  •0•8•108•0•Updated Nov 22, 2024Nov 22, 2024

• project-management

  Public
  Tracking project metadata in the GO as issues.

  0•2•66•0•Updated Nov 18, 2024Nov 18, 2024

• noctua-standard-annotations

  Public
  TypeScript

  •0•0•14•0•Updated Nov 15, 2024Nov 15, 2024

• wc-ribbon

  Public
  This repository contains a collection of web components, initially centered on the GO ribbon, a UI tool to visualize a summary of annotations for gene and gene sets.

  godataui+ 6webcomponentannotationribbonassociationgeneontology

  TypeScript

  •2•2•16•6•Updated Nov 15, 2024Nov 15, 2024

• minerva

  Public
  geneontologygafnoctua+ 2noctua-modelsconverter

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •8•6•61•9•Updated Nov 7, 2024Nov 7, 2024

• reactome-go-cams

  Public
  A set of GO-CAMs built automatically from Reactome pathways.

  pathwaysreactomegeneontology+ 3reactome-pathwaynoctua-modelsgo-cam

  0•1•2•1•Updated Nov 5, 2024Nov 5, 2024

• neo

  Public
  noctua entity ontology

  annotationobogeneontology+ 3gafgo-camontology

  Perl

  •2•9•30•4•Updated Oct 26, 2024Oct 26, 2024

• devops-documentation

  Public
  General and specific documentation for geneontology DevOps

  BSD 3-Clause "New" or "Revised" License

  •1•0•4•0•Updated Oct 24, 2024Oct 24, 2024

• PAN-GO_CAFA_evaluation

  Public
  Contains code and data used to perform CAFA evaluation of PAN-GO data

  Perl

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• noctua-models-migrations

  Public
  Migration, change, update metadata for noctua-models

  Ruby

  •0•0•1•0•Updated Oct 2, 2024Oct 2, 2024

• gopreprocess

  Public
  Python

  •

  MIT License

  •1•3•1•0•Updated Sep 19, 2024Sep 19, 2024

• sparql-for-pathway-go-cams

  Public
  SPARQL queries and pipeline for filtering "pathway-like" GO-CAM models and packaging into tarball

  Makefile

  •0•0•1•0•Updated Sep 9, 2024Sep 9, 2024