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    60 repositories

    • pytorch

      Public
      Tensors and Dynamic neural networks in Python with strong GPU acceleration
      Python
      •
      Other
      •23k•0•0•0•Updated Dec 24, 2024Dec 24, 2024

    • wf-human-variation

      Public
      Nextflow
      •
      Other
      •51•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • Sniffles

      Public
      Structural variation caller using third generation sequencing
      Python
      •
      Other
      •96•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • Clair3

      Public
      Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
      Python
      •31•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • wf-basecalling

      Public
      Nextflow
      •
      Other
      •18•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • dagster

      Public
      An orchestration platform for the development, production, and observation of data assets.
      Python
      •
      Apache License 2.0
      •1.6k•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • fluvio

      Public
      Lean and mean distributed stream processing system written in rust and web assembly. Alternative to Kafka + Flink in one.
      Rust
      •
      Apache License 2.0
      •488•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • dorado

      Public
      Oxford Nanopore's Basecaller
      C++
      •
      Other
      •69•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • trgt

      Public
      R&D of FGF14 repeat calling
      Rust
      •
      Other
      •10•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • neuro_resources

      Public
      A list of links and pages for early career neuroscientists covering neuroimaging, programming and research skills
      2•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • evo

      Public
      Biological foundation modeling from molecular to genome scale
      Jupyter Notebook
      •
      Apache License 2.0
      •157•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • paper-qa

      Public
      High accuracy RAG for answering questions from scientific documents with citations
      Python
      •
      Apache License 2.0
      •679•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • FreeLearningResourcesForSoftwareTesters

      Public
      A New Project to create a set of links to free Online Learning Resources for New and Experienced Software Testers.
      MIT License
      •243•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • jasmine

      Public
      Predict 5mC in PacBio HiFi reads
      BSD 3-Clause Clear License
      •1•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • awesome-biomedical-knowledge-graphs

      Public
      A curated list of biomedical knowledge graphs and of resources for their construction.
      TeX
      •
      Creative Commons Attribution Share Alike 4.0 International
      •3•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • django-plotly-dash

      Public
      Expose plotly dash apps as django tags
      Python
      •
      MIT License
      •128•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • RoboClerk

      Public
      A documentation automation system for SaMD and medical device software. Documentation-as-code for ISO62304 compliant development processes.
      C#
      •
      MIT License
      •1•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • data-repository-service-schemas

      Public
      A repository for the schemas used for the Data Repository Service.
      Apache License 2.0
      •53•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • awesome-single-cell

      Public
      Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
      MIT License
      •1k•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • sawfish

      Public
      Structural variant discovery and genotyping from mapped PacBio HiFi data
      Other
      •1•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • AI-for-Bio

      Public
      A free and collaborative space for Machine Learning 🤖 applied to Biology 🧬
      Jupyter Notebook
      •
      MIT License
      •7•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • FGF14_analyses

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • bonito

      Public
      A PyTorch Basecaller for Oxford Nanopore Reads
      Python
      •
      Other
      •123•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • FGF14_basecalling

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jul 4, 2024Jul 4, 2024

    • Aid-ALS-via-Knowledge-Graph

      Public
      This research project focuses on constructing a Knowledge Graph (KG) for Amyotrophic Lateral Sclerosis (ALS), utilizing innovative ML algorithms and NLP techniques for efficient extraction of entities and relationships from scholarly articles.
      Jupyter Notebook
      •3•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • CoLoRSdb

      Public
      WDL
      •1•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • DeepPurpose

      Public
      A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •279•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • ethEpigen2024_materials

      Public
      Materials for the 2024 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"
      HTML
      •
      GNU General Public License v3.0
      •19•0•0•0•Updated May 31, 2024May 31, 2024

    • OpenQMS

      Public
      OpenQMS.net is a lightweight, scalable and cloud-native Quality Management System (QMS) application.
      JavaScript
      •
      GNU Affero General Public License v3.0
      •3•0•0•0•Updated Apr 23, 2024Apr 23, 2024

    • PhenoSV

      Public
      PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.
      Python
      •
      MIT License
      •4•0•0•0•Updated Apr 19, 2024Apr 19, 2024