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    26 repositories

    • MONAIfbs

      Public
      Python
      •
      Apache License 2.0
      •4•23•3•1•Updated Nov 3, 2023Nov 3, 2023

    • FetalBrainParcellation

      Public archive
      A tool for the automatic segmentation of fetal brain 3D T2-weighted MRI
      deep-learningpytorchmedical-imagingsegmentationimage-segmentation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•0•Updated Jun 22, 2023Jun 22, 2023

    • NiftyMIC

      Public
      NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •35•143•15•0•Updated Feb 15, 2022Feb 15, 2022

    • GIFT-Grab

      Public
      An open-source C++ and Python API for acquiring, processing and encoding video streams in real time. Supports several frame-grabber cards, standard-compliant network streams and video files. Python API is compatible with NumPy and SciPy.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •14•42•23•5•Updated Feb 22, 2021Feb 22, 2021

    • NSoL

      Public
      The Numerical Solver Library (NSoL) is a research-focused toolkit for denoising and deconvolution applications using ADMM and Primal-Dual methods.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•8•0•0•Updated Jan 31, 2021Jan 31, 2021

    • FetalBrainSegmentation_MONAI

      Public
      Tool for fetal brain segmentation in MRI
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•5•0•Updated Nov 27, 2020Nov 27, 2020

    • puma

      Public
      Python Unified Multi-tasking API (PUMA)
      Python
      •
      Apache License 2.0
      •0•0•13•2•Updated Jul 29, 2020Jul 29, 2020

    • ITK_NiftyMIC

      Public
      This repository contains numerous additional filters and functions to extend the standard (Wrap)ITK Release 4.13. It is a necessary requirement in order to use NiftyMIC and related toolkits.
      C++
      •
      Apache License 2.0
      •2•4•1•0•Updated Dec 7, 2019Dec 7, 2019

    • PySiTK

      Public
      PySiTK is a research-focused toolkit containing a collection of Python helper functions. In particular it facilitates the interaction between SimpleITK and ITK.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•7•0•0•Updated Aug 11, 2019Aug 11, 2019

    • SimpleReg

      Public
      SimpleReg is a research-focused toolkit that provides tools helpful for (medical) image registration and processing.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•21•1•0•Updated Jul 26, 2019Jul 26, 2019

    • SPOT-A-NeonatalRabbit

      Public
      Segmentation Propagation on Target (...as a Neonatal Rabbit)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•0•0•Updated Jul 12, 2019Jul 12, 2019

    • MRImultiAtlasForNeonatalRabbitBrain

      Public
      Code for the benchmarking and validation of the Neonatal Rabbit brain Multi-Atlas
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Apr 20, 2019Apr 20, 2019

    • RabbitBrainAnalysis

      Public
      Full pipeline for processing, segmentation and data analysis of a rabbit brain scan. See also https://www.sciencedirect.com/science/article/pii/S1053811918305366?via%3Dihub
      Python
      •2•0•0•0•Updated Apr 20, 2019Apr 20, 2019

    • DyBaORF

      Public
      Dymanically Balanced Online Random Forest
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •4•5•0•1•Updated Apr 19, 2019Apr 19, 2019

    • fetal_brain_seg

      Public
      A toolkit for fetal brain localization and segmentation using deep learning
      Python
      •8•22•2•1•Updated Apr 19, 2019Apr 19, 2019

    • Xono2L

      Public
      LabVIEW-compatible, extensible C++ API for capturing live ultrasound streams
      windowsstreamingreal-timevideolabviewmedicalmedical-imagingimagingultrasoundreal-time-video-streaming
      C++
      •
      Apache License 2.0
      •1•3•10•1•Updated Apr 15, 2019Apr 15, 2019

    • lie_exponential

      Public archive
      Numerical computation of the Lie exponential for stationary velocity fields.
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Jan 29, 2019Jan 29, 2019

    • SlicSeg

      Public
      An API and GUI application for semi-automated interactive segmentation of medical images.
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •8•18•0•1•Updated Jan 15, 2019Jan 15, 2019

    • vessel-tools

      Public
      Scripts and utility programs for extracting and processing vasculature
      C++
      •
      Other
      •3•1•0•0•Updated Aug 21, 2018Aug 21, 2018

    • endocal

      Public
      A cross-platform, compact GUI application for the optical distortion calibration of fluid-immersed endoscopes
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•4•0•Updated Apr 19, 2018Apr 19, 2018

    • GiftCloudUploader

      Public
      A Java Web Start application for anonymising and uploading DICOM data to a GIFT-Cloud or XNAT server
      data-sciencedatabasemedical-imagingmedical-image-computingmedical-image-processingxnatgift-cloudgift-surg
      Java
      •
      Other
      •5•4•1•0•Updated Jan 31, 2018Jan 31, 2018

    • VolumetricReconstructionFromPrintedFilms

      Public
      A research-focused toolkit developed within the GIFT-Surg project to reconstruct a volumetric representation from printed brain MR films.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•0•Updated Dec 18, 2017Dec 18, 2017

    • NiftyMatch

      Public
      A library featuring GPU implementations of feature detection and matching algorithms.
      Cuda
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•1•0•Updated Oct 25, 2017Oct 25, 2017

    • HighRes3DNet

      Public
      Apache License 2.0
      •3•24•0•0•Updated Jun 26, 2017Jun 26, 2017

    • GiftCloudServerModule

      Public
      GIFT-Cloud's customised server module, used to customise a GIFT-Cloud server
      0•0•0•0•Updated Oct 3, 2016Oct 3, 2016

    • GiftCloudServerBuilder

      Public
      GIFT-Cloud's customised fork of xnatbuilder, used to set up a GIFT-Cloud server
      JavaScript
      •1•4•0•0•Updated Oct 3, 2016Oct 3, 2016