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    11 repositories

    • supportingdata

      Public
      A general repository for additional supporting data for manuscripts published from the Holehouse lab
      Jupyter Notebook
      •3•6•0•0•Updated Dec 16, 2024Dec 16, 2024

    • shephard

      Public
      Sequence-based Hierarchical and Extendable Platform for High-throughput Analysis of Region of Disorder
      Python
      •
      GNU Lesser General Public License v3.0
      •1•6•0•0•Updated Dec 3, 2024Dec 3, 2024

    • idpseminars.github.io

      Public
      Github Pages for IDPSeminars website
      JavaScript
      •
      MIT License
      •45k•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • soursop

      Public
      soursop is an analysis suite for all-atom simulations of disordered proteins. NOTE soursop used to be called camparitraj...
      Python
      •
      GNU Lesser General Public License v3.0
      •4•11•0•0•Updated Nov 26, 2024Nov 26, 2024

    • ALBATROSS-colab

      Public
      Repository used with Google Colab notebooks for our IDR ensemble dimension predictors.
      Jupyter Notebook
      •
      MIT License
      •1•8•0•0•Updated Nov 7, 2024Nov 7, 2024

    • protfasta

      Public
      Simple but robust parser for protein-based FASTA files
      Python
      •
      MIT License
      •2•1•1•0•Updated Nov 5, 2024Nov 5, 2024

    • shephard-data

      Public
      A repository for sharing SHEPHARD-formatted data. This repo contains only data, information on how it was obtained, and a clear protocol the resulting data cleaning protocols used.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 7, 2024May 7, 2024

    • shephard-colab

      Public
      Repository used with Google Colab notebooks for SHEPHARD. Should be kept lightweight as will be cloned.
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Oct 13, 2023Oct 13, 2023

    • disorderedsensors

      Public
      MIT License
      •0•0•0•0•Updated Jun 7, 2022Jun 7, 2022

    • bib2coa

      Public
      Simple tool to convert a bibtex file to the start of an NSF-compliant COA file
      Python
      •
      MIT License
      •0•2•0•0•Updated Mar 10, 2021Mar 10, 2021

    • solutionspacescanner

      Public
      SolutionSpaceScanner: Python package for generating ABSINTH parameter files
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•1•0•Updated Feb 10, 2021Feb 10, 2021