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    20 repositories

    • clearcut

      Public
      This is clearcut, the reference implementation for the Relaxed Neighbor Joining algorithm.
      C
      •
      Other
      •3•2•0•0•Updated Oct 13, 2021Oct 13, 2021

    • Seed

      Public
      R/Shiny application for viewing microbial community data
      R
      •9•19•6•0•Updated Dec 17, 2020Dec 17, 2020

    • HTStream

      Public
      A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
      C++
      •
      Apache License 2.0
      •9•3•0•0•Updated May 31, 2020May 31, 2020

    • seqyclean

      Public
      C++
      •
      MIT License
      •2•26•4•1•Updated Oct 17, 2018Oct 17, 2018

    • dbcHelpers

      Public
      Helper tools for pre and post dbcAmplicon runs.
      Python
      •0•0•0•0•Updated Oct 12, 2018Oct 12, 2018

    • GRC_Scripts

      Public
      Executable R and Python scripts for the Genomics Resources Core
      R
      •
      Artistic License 2.0
      •2•8•4•0•Updated May 14, 2018May 14, 2018

    • HTStream-validation

      Public
      Validation and figures for HTStream
      0•0•0•0•Updated Feb 1, 2018Feb 1, 2018

    • SAD-BCB501-Spring2018

      Public
      Analysis of various datasets for the Sequence Analysis Discussion group.
      0•4•0•0•Updated Jan 22, 2018Jan 22, 2018

    • MetAmp

      Public
      R
      •0•0•2•0•Updated Aug 10, 2016Aug 10, 2016

    • ARC

      Public
      Assembly by Reduced Complexity (ARC)
      Python
      •
      Apache License 2.0
      •5•41•14•0•Updated Mar 29, 2016Mar 29, 2016

    • evalyn

      Public
      EVALYN - A evolutionary computation approach to evolving high-quality guide trees and multiple sequence alignments.
      C
      •1•0•0•0•Updated Jul 6, 2015Jul 6, 2015

    • slopmap

      Public
      C++
      •0•0•0•0•Updated Jun 19, 2015Jun 19, 2015

    • grcScripts2

      Public
      University of Idaho Genomics Resources Core HTS Processing scripts as an R package
      R
      •
      Apache License 2.0
      •1•2•0•0•Updated Mar 2, 2015Mar 2, 2015

    • APER

      Public
      Analyzing Positional Error in Reads
      Shell
      •
      Apache License 2.0
      •0•1•0•0•Updated Feb 25, 2015Feb 25, 2015

    • arGENt

      Public
      R
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 22, 2014Oct 22, 2014

    • grcScriptsPy

      Public
      Genomics Resources Core Python Bioinformatic Scripts
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 2, 2014Sep 2, 2014

    • khmer

      Public
      In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
      C
      •
      Other
      •295•1•0•0•Updated Jun 2, 2014Jun 2, 2014

    • hitsapipe

      Public
      High Throughput Sequence Analysis Pipeline
      Python
      •0•1•2•0•Updated Sep 3, 2013Sep 3, 2013

    • ibest.github.com

      Public
      0•0•0•0•Updated Nov 2, 2012Nov 2, 2012

    • Roche454QAReport

      Public
      R package to produce a Quality Assurance Report for Roche 454 data
      R
      •0•1•0•0•Updated Mar 4, 2011Mar 4, 2011