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    9 repositories

    • split_bed_by_index

      Public
      Split bed intervals by estimated read counts from bam index
      Nim
      •
      MIT License
      •0•0•2•0•Updated Mar 12, 2024Mar 12, 2024

    • xHLA

      Public
      xHLA: Fast and accurate HLA typing from short read sequence data
      Jupyter Notebook
      •
      Other
      •52•0•0•0•Updated Jun 8, 2023Jun 8, 2023

    • docs

      Public
      📘 isabl guides and tutorials.
      0•0•0•0•Updated Mar 13, 2023Mar 13, 2023

    • toil

      Public
      A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
      Python
      •
      Apache License 2.0
      •240•1•0•0•Updated Aug 3, 2022Aug 3, 2022

    • dryclean

      Public
      Irons out wrinkles in noisy coverage data using robust PCA
      R
      •14•0•0•0•Updated Mar 15, 2022Mar 15, 2022

    • THetA

      Public
      Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This repository includes the updated algorithm, called THetA2.
      Python
      •33•0•0•0•Updated Aug 20, 2021Aug 20, 2021

    • cnvkit_unmatched

      Public
      Copy number variant detection from targeted DNA sequencing
      Python
      •
      Other
      •168•0•0•0•Updated Aug 10, 2021Aug 10, 2021

    • hileup

      Public
      horizontal pileup
      C
      •
      Apache License 2.0
      •3•0•0•0•Updated Jul 26, 2021Jul 26, 2021

    • AnnotSV

      Public
      Annotation and Ranking of Structural Variation
      Tcl
      •
      GNU General Public License v3.0
      •34•0•0•0•Updated Aug 29, 2019Aug 29, 2019