Repositories list

• data-models

  Public
  Versioned history of the MC2 Center data model

  Python

  •

  Creative Commons Zero v1.0 Universal

  •1•4•32•1•Updated Dec 18, 2024Dec 18, 2024

• infer_hallmarks_of_cancer

  Public
  LLM inference of Hallmarks of Cancer from text

  Jupyter Notebook

  •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• mc2-center-dcc

  Public
  Data coordination resources for CCKP (and MC2 in general)

  Python

  •0•0•9•0•Updated Nov 2, 2024Nov 2, 2024

• cckp-toolkit-workflow

  Public
  Shell

  •1•2•0•0•Updated Nov 1, 2024Nov 1, 2024

• schema_visualization

  Public
  This repository is for extracting D3 and Javascript code from observable to produce schema visualization

  JavaScript

  •6•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• RFC-Webpage

  Public
  JavaScript

  •0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

• mcmicro_workshop_2024

  Public
  Respository hosting materials related to the MCMICRO workshop, held during the NCI Junior Investigator Annual Meeting, August 22-23, 2024

  HTML

  •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

• data_curator_config

  Public
  Project configurations for the Data Curator App

  21•1•0•0•Updated Jul 25, 2024Jul 25, 2024

• pubmed-crawler

  Public
  PubMed Crawler for CCKP publication manifest

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•1•3•0•Updated Jul 9, 2024Jul 9, 2024

• cckp-toolkit

  Public
  0•1•0•0•Updated May 29, 2024May 29, 2024

• mcmicro

  Public
  Multiple-choice microscopy pipeline

  Nextflow

  •

  MIT License

  •58•0•0•0•Updated May 17, 2024May 17, 2024

• nf-histoqc

  Public
  A Nextflow wrapper for HistoQC

  quality-controlnextflowmicroscopy+ 3imaginghistologydigital-pathology

  Nextflow

  •

  MIT License

  •1•0•6•4•Updated Apr 4, 2024Apr 4, 2024

• CohortFinder

  Public
  Intelligent data partitioning using quality control metrics

  Python

  •

  BSD 3-Clause Clear License

  •4•0•0•0•Updated Mar 1, 2024Mar 1, 2024

• mc2-dls-form

  Public
  Data Landscape Survey for MC2

  HTML

  •2•0•2•0•Updated Feb 21, 2024Feb 21, 2024

• histoqc-openslide-converter

  Public
  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Nov 24, 2023Nov 24, 2023

• UnMicst

  Public
  UNet script, model, sample data

  Python

  •

  MIT License

  •12•0•0•0•Updated Nov 7, 2023Nov 7, 2023

• HistoQC

  Public
  HistoQC is an open-source quality control tool for digital pathology slides

  Python

  •

  BSD 3-Clause Clear License

  •106•0•0•0•Updated Oct 30, 2023Oct 30, 2023

• metadata-dashboard

  Public
  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Sep 18, 2023Sep 18, 2023

• .github

  Public
  0•0•0•0•Updated Sep 6, 2023Sep 6, 2023

• minidream-challenge

  Public
  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 3, 2023Aug 3, 2023

• minidream-r-env

  Public
  Resources for setting up and managing an RStudio environment for interactive mini-DREAM activities

  Shell

  •

  Apache License 2.0

  •1•3•3•0•Updated Jun 23, 2023Jun 23, 2023

• minidream-challenge-2018

  Public archive
  HTML

  •

  Apache License 2.0

  •8•0•0•1•Updated Apr 22, 2023Apr 22, 2023

• DCA-Data-Ingress-Docs

  Public
  Documentation for the MC2 data ingress workflow - to share with tester teams and early adopters.

  Ruby

  •10•0•0•0•Updated Apr 7, 2023Apr 7, 2023

• data-models-ARCHIVED

  Public archive
  Versioned history of the CCKP data model

  Python

  •0•1•0•0•Updated Mar 10, 2023Mar 10, 2023

• data_curator

  Public archive
  Data Ingest Shiny App

  R

  •

  Apache License 2.0

  •20•0•0•0•Updated Jan 9, 2023Jan 9, 2023

• csbc-pson-dcc

  Public archive
  Data coordination resources for the NCI CSBC and PS-ON consortia

  HTML

  •4•1•0•1•Updated Aug 29, 2022Aug 29, 2022

• csbc-pson-manifest

  Public archive
  A Shiny app to add manifests to the Cancer Complexity Knowledge Portal.

  R

  •2•0•2•0•Updated May 17, 2022May 17, 2022

• minidream-containers

  Public
  What you need to host a miniDREAM challenge

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 7, 2021Jul 7, 2021