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    • anvio

      Public
      An analysis and visualization platform for 'omics data
      Python
      GNU General Public License v3.0
      14544715615Updated Dec 23, 2024Dec 23, 2024
    • Web content for Meren Lab
      Jupyter Notebook
      MIT License
      311121Updated Dec 18, 2024Dec 18, 2024
    • anvio.org

      Public
      The anvi'o community web page
      HTML
      11421Updated Dec 16, 2024Dec 16, 2024
    • Semi-curated metadata for marine metagenomes (and other 'omics data types)
      R
      0140Updated Sep 18, 2024Sep 18, 2024
    • Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
      Python
      GNU General Public License v2.0
      224050Updated Jun 24, 2024Jun 24, 2024
    • A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
      Python
      GNU General Public License v2.0
      319171Updated Dec 16, 2023Dec 16, 2023
    • A simple script to display stuff on a world map with R and ggplot
      R
      GNU General Public License v3.0
      41710Updated Sep 15, 2023Sep 15, 2023
    • The code behind anvi'server
      HTML
      GNU Affero General Public License v3.0
      2530Updated May 9, 2023May 9, 2023
    • CONCOCT

      Public
      Clustering cONtigs with COverage and ComposiTion
      Python
      Other
      48000Updated Mar 22, 2022Mar 22, 2022
    • A set of Python utilities to parse Google Scholar data
      Python
      GNU General Public License v3.0
      0250Updated Jan 11, 2022Jan 11, 2022
    • Map single amino acid variants onto protein structures. Modus operandi: explore relationships between genetic variation and structural biology.
      Python
      GNU General Public License v3.0
      0200Updated Oct 12, 2021Oct 12, 2021
    • Python
      1100Updated Jun 3, 2021Jun 3, 2021
    • The most basic SLURM wrapper
      Python
      MIT License
      1000Updated Oct 28, 2020Oct 28, 2020
    • Simulate metagenomic short reads from one or more populations.
      Python
      GNU General Public License v2.0
      42600Updated Jun 7, 2020Jun 7, 2020
    • Python
      GNU General Public License v3.0
      5930Updated Aug 6, 2019Aug 6, 2019
    • 0110Updated Feb 18, 2019Feb 18, 2019
    • Our little Slack Bot that helps us keep an eye on our server
      Python
      GNU General Public License v3.0
      0100Updated Dec 10, 2018Dec 10, 2018
    • BSD-QBio4

      Public
      Fourth BSD Quantitative Biology Bootcamp @ MBL
      R
      GNU General Public License v3.0
      9000Updated Aug 3, 2018Aug 3, 2018
    • BSD-QBio3

      Public
      BSD Bootcamp on Quantitative Biology 3
      HTML
      GNU General Public License v3.0
      8000Updated Jul 31, 2018Jul 31, 2018
    • A repository with scripts to run pipeline that are commonly used in the Meren Lab
      Shell
      GNU General Public License v3.0
      41180Updated Feb 7, 2018Feb 7, 2018
    • Parser to add external gene calls and functional annotation from Prokka to Anvi'o.
      Python
      5000Updated May 18, 2017May 18, 2017