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    63 repositories

    • cedar-cee-demo-generic

      Public
      CEDAR Embeddable Editor Integration into a simple HTML + Javascript + CSS website
      0•1•0•0•Updated May 18, 2023May 18, 2023

    • cedar-docs

      Public archive
      Development documentation for CEDAR
      HTML
      •
      Other
      •1•23•5•0•Updated Apr 13, 2023Apr 13, 2023

    • metadata-analysis-tools

      Public
      A collection of tools for analyzing biosample metadata
      Java
      •
      Other
      •0•2•0•3•Updated Jul 15, 2022Jul 15, 2022

    • metadata-provider

      Public
      NCATS Metadata Provider
      Jupyter Notebook
      •2•1•0•1•Updated Jun 22, 2022Jun 22, 2022

    • cedar-dev-root

      Public
      Shell
      •0•0•0•0•Updated May 12, 2022May 12, 2022

    • bao_cedar_template_converter

      Public
      A script to convert a BAO template to a CEDAR template
      Ruby
      •4•1•0•0•Updated Jan 7, 2022Jan 7, 2022

    • instance-dashboard

      Public
      Dashboard to flexibly present information on CEDAR instances
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Oct 30, 2021Oct 30, 2021

    • phs-gdc

      Public
      PHS-GDC Prototype
      reactmetadatadata-sciencerknowledge-graphknowledge-baseknowledge-representationsemantic-technologiesdata-commonsenvironmental-data
      JavaScript
      •0•1•35•0•Updated Sep 9, 2021Sep 9, 2021

    • rui2ccf

      Public
      A Python tool to convert RUI objects to CCF Spatial Ontology (CCF-SO)
      Python
      •0•0•0•0•Updated Sep 3, 2021Sep 3, 2021

    • cedar2ccf

      Public
      A Python tool to convert CEDAR metadata instances to CCF Biological Structure Ontology (CCF-BSO).
      Python
      •
      Other
      •0•0•0•0•Updated Sep 3, 2021Sep 3, 2021

    • commondata-r

      Public
      A collection of common data from DataCommons.org
      R
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 3, 2021Jul 3, 2021

    • cedar-webtools

      Public
      A collection of CEDAR Web-based tools
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jun 16, 2021Jun 16, 2021

    • cedar-experiments-valuerecommender2019

      Public
      Repository containing code and datasets used to evaluate CEDAR's Value Recommender
      Python
      •
      Other
      •0•0•0•1•Updated Jun 1, 2021Jun 1, 2021

    • cedar-screenshots-robot

      Public
      Automated generation of CEDAR Workbench screenshots using the Robot Framework (https://robotframework.org/)
      HTML
      •0•0•0•0•Updated Jan 11, 2021Jan 11, 2021

    • metadata-automation-challenge

      Public
      R
      •5•0•0•0•Updated May 14, 2020May 14, 2020

    • cedar-robot-tests

      Public
      CEDAR Robot Framework Tests
      RobotFramework
      •0•0•0•0•Updated Jan 9, 2020Jan 9, 2020

    • cedar-experiments-curation

      Public
      Repository containing experimental scripts for improving metadata quality
      Python
      •0•0•0•0•Updated Dec 14, 2019Dec 14, 2019

    • metadata-editor

      Public
      Angular rewrite of the Cedar metadata editor
      0•0•0•0•Updated Jul 31, 2019Jul 31, 2019

    • pipelines

      Public
      Material describing CEDAR Workbench data publication pipelines
      0•0•0•0•Updated Jul 9, 2019Jul 9, 2019

    • cedar-workspace-server-deprecated

      Public archive
      Backend services to support operations on Folders
      Java
      •
      Other
      •0•0•4•0•Updated Feb 27, 2019Feb 27, 2019

    • biosample-exporter-deprecated

      Public archive
      Project that generates BioSample XML submissions from CEDAR BioSample template instances
      Java
      •
      Other
      •0•0•0•0•Updated Jan 23, 2019Jan 23, 2019

    • cedar-fev2

      Public
      0•0•0•0•Updated Sep 21, 2018Sep 21, 2018

    • schemaorg-paper-resources

      Public
      All resources (e.g., data, code, artifacts) used and mentioned in our papers
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Jul 10, 2018Jul 10, 2018

    • schemaorg-search-app

      Public
      A simple web-app that consumes the schema.org structured data
      JavaScript
      •
      Apache License 2.0
      •0•0•3•0•Updated Jul 8, 2018Jul 8, 2018

    • schemaorg-pipeline-playground

      Public archive
      A sandbox to play around with the schema.org pipeline data transformation
      HTML
      •
      Other
      •0•0•1•0•Updated Jun 26, 2018Jun 26, 2018

    • schemaorg-pipeline

      Public
      The code to transform metadata to HTML+Schema.org markup
      Java
      •
      Other
      •0•0•0•0•Updated Jun 26, 2018Jun 26, 2018

    • schemaorg-pipeline-server

      Public
      Backend module to provide the schema.org data publication pipeline services
      Java
      •
      Other
      •0•0•0•0•Updated Jun 26, 2018Jun 26, 2018

    • deprecated-CEDAR-to-NCBI-Pipeline

      Public archive
      Aiming to bring high-quality metadata at the NCBI
      0•0•0•0•Updated Jun 8, 2018Jun 8, 2018

    • schemaorg-pipeline-standalone

      Public
      A demo application of the schemaorg-pipeline for ClinicalTrials and Bio2RDF Drugbank
      Java
      •
      Other
      •0•0•0•0•Updated Jun 4, 2018Jun 4, 2018

    • immport-util

      Public archive
      A utlility library to prepare metadata instances from AiRR to Immport data specification
      Java
      •
      Other
      •0•0•0•0•Updated Apr 11, 2018Apr 11, 2018