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    192 repositories

    • sc-MetaBrain-consortium

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 9, 2024Nov 9, 2024

    • molgenis-emx2

      Public
      MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
      Vue
      •
      GNU Lesser General Public License v3.0
      •18•14•251•61•Updated Nov 8, 2024Nov 8, 2024

    • vip

      Public
      Variant Interpretation Pipeline
      pipelinegeneticsvariant-interpretation
      Shell
      •
      GNU Lesser General Public License v3.0
      •6•23•9•9•Updated Nov 8, 2024Nov 8, 2024

    • vip-decision-tree

      Public
      Decision tree module for the Variant Interpretation Pipeline (vip)
      Java
      •
      GNU Lesser General Public License v3.0
      •0•3•0•4•Updated Nov 8, 2024Nov 8, 2024

    • vip-report-template

      Public
      Report template for Variant Call Format (VCF) Report generator
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•4•3•4•Updated Nov 8, 2024Nov 8, 2024

    • molgenis-tools-commander

      Public
      A command line interface for MOLGENIS
      hacktoberfest
      CSS
      •
      GNU Lesser General Public License v3.0
      •8•8•16•14•Updated Nov 8, 2024Nov 8, 2024

    • molgenis.org

      Public
      Source code of the (new) website for MOLGENIS
      CSS
      •
      GNU Lesser General Public License v3.0
      •22•0•0•2•Updated Nov 8, 2024Nov 8, 2024

    • PGx-pipeline

      Public
      Farmacogenetics pipeline
      Shell
      •
      GNU Lesser General Public License v3.0
      •4•1•0•0•Updated Nov 7, 2024Nov 7, 2024

    • vip-report

      Public
      Report generator for Variant Call Format (VCF) files
      HTML
      •
      GNU Lesser General Public License v3.0
      •1•3•3•1•Updated Nov 7, 2024Nov 7, 2024

    • vip-inheritance-matcher

      Public
      annotates VCF samples with denovo and possible compound flags and matching inheritance modes
      Java
      •
      GNU Lesser General Public License v3.0
      •0•5•0•0•Updated Nov 6, 2024Nov 6, 2024

    • vite-plugin-inline

      Public
      Vite plugin that embeds .js and .css as base85 data
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•10•0•0•Updated Nov 6, 2024Nov 6, 2024

    • vip-report-api

      Public
      Report API for Variant Call Format (VCF) Report templates
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•2•0•1•Updated Nov 6, 2024Nov 6, 2024

    • vip-report-vcf

      Public
      TypeScript VCF library with support for both reading and writing
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•2•0•0•Updated Nov 6, 2024Nov 6, 2024

    • ds-tidyverse-client

      Public
      R
      •1•1•1•2•Updated Nov 5, 2024Nov 5, 2024

    • ds-admin-support

      Public
      Consented admin update tool for DataSHIELD servers (Armadillo/Opal)
      Vue
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • ds-tidyverse

      Public
      R
      •1•2•0•1•Updated Nov 4, 2024Nov 4, 2024

    • molgenis-service-armadillo

      Public
      Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite
      hacktoberfest
      Java
      •
      GNU Lesser General Public License v3.0
      •10•7•69•9•Updated Nov 1, 2024Nov 1, 2024

    • NGS_Automated

      Public
      Shell
      •
      GNU Lesser General Public License v3.0
      •8•4•13•1•Updated Oct 30, 2024Oct 30, 2024

    • projects-rd-recon4imd

      Public
      Python
      •
      GNU General Public License v3.0
      •2•0•0•2•Updated Oct 26, 2024Oct 26, 2024

    • GAP

      Public
      Genotyping Array Pipeline
      Shell
      •
      GNU Lesser General Public License v3.0
      •8•3•13•0•Updated Oct 24, 2024Oct 24, 2024

    • vip-web

      Public
      Variant Interpretation Pipeline web interface
      Java
      •
      GNU Lesser General Public License v3.0
      •0•0•0•1•Updated Oct 16, 2024Oct 16, 2024

    • vip-inheritance

      Public
      Java
      •
      GNU Lesser General Public License v3.0
      •0•1•0•0•Updated Oct 16, 2024Oct 16, 2024

    • vip-utils

      Public
      Shared utils and resources for VIP modules and tools
      Java
      •
      GNU Lesser General Public License v3.0
      •0•0•2•0•Updated Oct 15, 2024Oct 15, 2024

    • asterix

      Public
      Automated PGx pipeline
      R
      •2•2•0•2•Updated Oct 14, 2024Oct 14, 2024

    • capice-resources

      Public
      Repository for resource files for CAPICE and updating CAPICE model
      Python
      •
      GNU Lesser General Public License v3.0
      •0•1•8•1•Updated Oct 14, 2024Oct 14, 2024

    • molgenis-r-armadillo

      Public
      Client to manage shared files in the MOLGENIS Armadillo suite from R
      hacktoberfest
      R
      •5•3•5•0•Updated Oct 14, 2024Oct 14, 2024

    • molgenis-app-eqtlgen

      Public
      Frontend for eqtlgen paper
      HTML
      •
      GNU Lesser General Public License v3.0
      •4•0•0•4•Updated Oct 11, 2024Oct 11, 2024

    • PICALO

      Public
      eQTL interaction optimization using expectation maximization
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•5•0•3•Updated Oct 8, 2024Oct 8, 2024

    • aoc-2023

      Public
      Python
      •1•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • take-it-easyconfigs

      Public
      Perl
      •8•0•0•8•Updated Oct 1, 2024Oct 1, 2024