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    115 repositories

    • py-rcsb_workflow

      Public
      Python workflow entry points for database and search tools
      Python
      •
      Apache License 2.0
      •3•3•0•1•Updated Dec 11, 2024Dec 11, 2024

    • py-rcsb_mock-data

      Public
      Common mock data used to in testing RCSB Python modules
      3•0•0•1•Updated Dec 11, 2024Dec 11, 2024

    • py-rcsbsearchapi

      Public
      Python interface for the RCSB PDB search API.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•54•0•0•Updated Dec 11, 2024Dec 11, 2024

    • rcsb-stats

      Public
      Compute archive-wide statistics. Powered by RCSB Search API and BinaryCIF.
      statisticsprotein-data-bankprotein-structure-analysis
      Java
      •1•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • py-rcsb-api

      Public
      Python interface for RCSB.org API services
      Python
      •
      MIT License
      •1•11•1•0•Updated Dec 11, 2024Dec 11, 2024

    • py-rcsb_exdb

      Public
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • py-rcsb_apps_sfconvert

      Public
      Reimplementation of sf_convert
      Python
      •
      Other
      •1•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • py-rcsb_utils_seqalign

      Public
      Sequence alignment utilities
      Python
      •
      Other
      •3•0•1•0•Updated Dec 10, 2024Dec 10, 2024

    • py-rcsb_utils_dictionary

      Public
      RCSB dictionary method utilities
      Python
      •
      Apache License 2.0
      •2•1•2•1•Updated Dec 10, 2024Dec 10, 2024

    • py-rcsb_utils_targets

      Public
      RCSB module containing methods for target data management
      Python
      •
      Apache License 2.0
      •0•0•2•0•Updated Dec 10, 2024Dec 10, 2024

    • py-rcsb_app_chem

      Public
      Chemical search services.
      Python
      •
      Apache License 2.0
      •0•0•0•3•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_validation

      Public
      Common utilities for calculating and accessing PDB validation data.
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_taxonomy

      Public
      Common utilities for accessing NCBI taxonomy data
      Python
      •
      Other
      •3•1•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_struct

      Public
      Python
      •
      Apache License 2.0
      •4•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_seq

      Public
      Utility methods for processing polymer sequence data.
      Python
      •
      Other
      •4•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_multiproc

      Public
      Collection of multiprocessing utilities
      Python
      •
      Other
      •3•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_insilico3d

      Public
      RCSB utilities for accessing in silico 3D models and metadata from external data resources.
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_go

      Public
      Gene Ontology Provider
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_ec

      Public
      Utilities for accessing Enzyme Commission classification data
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_config

      Public
      Shared configuration option utilities
      Python
      •
      Other
      •3•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_utils_citation

      Public
      A collection of Python Utility Classes for managing PDB citation data
      Python
      •
      Apache License 2.0
      •6•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • py-rcsb_exdb_assets

      Public
      Python
      •
      Other
      •3•0•0•2•Updated Dec 9, 2024Dec 9, 2024

    • py-mmcif

      Public
      mmCIF Core Access Library
      C++
      •
      Other
      •8•38•2•0•Updated Dec 8, 2024Dec 8, 2024

    • ciftools-java

      Public
      A Java library for handling text and BinaryCIF files.
      compressionbiology
      Java
      •
      MIT License
      •5•10•0•0•Updated Dec 4, 2024Dec 4, 2024

    • ffindex-java

      Public
      FFindex is a very simple index/database for huge amounts of small files.
      Java
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•1•0•0•Updated Dec 4, 2024Dec 4, 2024

    • mmcif_website_file_assets

      Public
      PDBx/mmCIF Resource Site Dictionary and Schema File Assets
      Shell
      •0•1•0•0•Updated Nov 12, 2024Nov 12, 2024

    • devops-cicd-github-actions

      Public
      Repo to test CI/CD pipelines and store reusable workflows
      Smarty
      •2•1•2•1•Updated Nov 7, 2024Nov 7, 2024

    • rcsb-idmapper

      Public
      IdMapper service extracted from Arches
      Java
      •
      The Unlicense
      •0•1•2•0•Updated Nov 7, 2024Nov 7, 2024

    • py-rcsb_utils_io

      Public
      Common shared Python I/O modules
      Python
      •
      Other
      •7•4•0•1•Updated Nov 5, 2024Nov 5, 2024

    • rcsb-training-resources

      Public
      Resources and materials referenced in RCSB PDB training events
      Jupyter Notebook
      •1•2•0•0•Updated Nov 4, 2024Nov 4, 2024